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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Stability and folding pathways of tetra-nucleosome from six-dimensional free energy surface
Xinqiang Ding, Xingcheng Lin, Bin Zhang
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 59

Showing 1-25 of 59 citing articles:

Nucleosome plasticity is a critical element of chromatin liquid–liquid phase separation and multivalent nucleosome interactions
Stephen E. Farr, Esmae J. Woods, Jerelle A. Joseph, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 127
Multiscale modeling of genome organization with maximum entropy optimization
Xingcheng Lin, Yifeng Qi, Andrew P. Latham, et al.
The Journal of Chemical Physics (2021) Vol. 155, Iss. 1
Open Access | Times Cited: 83
Histone H1 binding to nucleosome arrays depends on linker DNA length and trajectory
Marco Dombrowski, Maik Engeholm, Christian Dienemann, et al.
Nature Structural & Molecular Biology (2022) Vol. 29, Iss. 5, pp. 493-501
Open Access | Times Cited: 68
CENP-N promotes the compaction of centromeric chromatin
Keda Zhou, Magdalena Gębala, Dustin C. Woods, et al.
Nature Structural & Molecular Biology (2022) Vol. 29, Iss. 4, pp. 403-413
Open Access | Times Cited: 53
On the stability and layered organization of protein-DNA condensates
Andrew P. Latham, Bin Zhang
Biophysical Journal (2022) Vol. 121, Iss. 9, pp. 1727-1737
Open Access | Times Cited: 40
From Nucleosomes to Compartments: Physicochemical Interactions Underlying Chromatin Organization
Shuming Liu, Advait Athreya, Zhuohan Lao, et al.
Annual Review of Biophysics (2024) Vol. 53, Iss. 1, pp. 221-245
Open Access | Times Cited: 15
Brewing COFFEE: A Sequence-Specific Coarse-Grained Energy Function for Simulations of DNA−Protein Complexes
Debayan Chakraborty, Balaka Mondal, D. Thirumalai
Journal of Chemical Theory and Computation (2024) Vol. 20, Iss. 3, pp. 1398-1413
Open Access | Times Cited: 11
Active transcription and epigenetic reactions synergistically regulate meso-scale genomic organization
Aayush Kant, Zixian Guo, Vinayak Vinayak, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 9
Unifying coarse-grained force fields for folded and disordered proteins
Andrew P. Latham, Bin Zhang
Current Opinion in Structural Biology (2021) Vol. 72, pp. 63-70
Open Access | Times Cited: 44
Molecular organization of the early stages of nucleosome phase separation visualized by cryo-electron tomography
Meng Zhang, César Díaz-Celis, Bibiana Onoa, et al.
Molecular Cell (2022) Vol. 82, Iss. 16, pp. 3000-3014.e9
Open Access | Times Cited: 36
Angle between DNA linker and nucleosome core particle regulates array compaction revealed by individual-particle cryo-electron tomography
Meng Zhang, César Díaz-Celis, Jianfang Liu, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 7
Sequence Dependence in Nucleosome Dynamics
Prabir Khatua, Phu K. Tang, Abhik Ghosh Moulick, et al.
The Journal of Physical Chemistry B (2024) Vol. 128, Iss. 13, pp. 3090-3101
Open Access | Times Cited: 6
Liquid-like chromatin in the cell: What can we learn from imaging and computational modeling?
Yuji Itoh, Esmae J. Woods, Katsuhiko Minami, et al.
Current Opinion in Structural Biology (2021) Vol. 71, pp. 123-135
Open Access | Times Cited: 41
Chromatin fiber breaks into clutches under tension and crowding
Shuming Liu, Xingcheng Lin, Bin Zhang
Nucleic Acids Research (2022) Vol. 50, Iss. 17, pp. 9738-9747
Open Access | Times Cited: 24
Explicit ion modeling predicts physicochemical interactions for chromatin organization
Xingcheng Lin, Bin Zhang
eLife (2023) Vol. 12
Open Access | Times Cited: 16
Molecular dynamics simulations of nucleosomes are coming of age
Anastasiia S. Fedulova, Grigoriy A. Armeev, Tatiana A. Romanova, et al.
Wiley Interdisciplinary Reviews Computational Molecular Science (2024) Vol. 14, Iss. 4
Closed Access | Times Cited: 5
Genome modeling: From chromatin fibers to genes
Stephanie Portillo‐Ledesma, Zilong Li, Tamar Schlick
Current Opinion in Structural Biology (2022) Vol. 78, pp. 102506-102506
Open Access | Times Cited: 22
Interpretable Protein-DNA Interactions Captured by Structure-Sequence Optimization
Yafan Zhang, Irene Silvernail, Zhuyang Lin, et al.
(2025)
Open Access
Interpretable Protein-DNA Interactions Captured by Structure-Sequence Optimization
Yafan Zhang, Irene Silvernail, Zhuyang Lin, et al.
(2025)
Open Access
Multiscale modelling of chromatin organisation: Resolving nucleosomes at near-atomistic resolution inside genes
Jan Huertas, Esmae J. Woods, Rosana Collepardo‐Guevara
Current Opinion in Cell Biology (2022) Vol. 75, pp. 102067-102067
Open Access | Times Cited: 18
OpenABC enables flexible, simplified, and efficient GPU accelerated simulations of biomolecular condensates
Shuming Liu, Cong Wang, Andrew P. Latham, et al.
PLoS Computational Biology (2023) Vol. 19, Iss. 9, pp. e1011442-e1011442
Open Access | Times Cited: 10
Explicit ion modeling predicts physicochemical interactions for chromatin organization
Xingcheng Lin, Bin Zhang
eLife (2024) Vol. 12
Open Access | Times Cited: 3
Dynamics of nucleosomes and chromatin fibers revealed by single-molecule measurements
Si-Hyeong Nho, Hajin Kim
BMB Reports (2025) Vol. 58, Iss. 1, pp. 24-32
Open Access
Unveiling nucleosome dynamics: A comparative study using all-atom and coarse-grained simulations enhanced by principal component analysis
Abhik Ghosh Moulick, Rutika Patel, Augustine C. Onyema, et al.
The Journal of Chemical Physics (2025) Vol. 162, Iss. 6
Open Access
Connected Chromatin Amplifies Acetylation-Modulated Nucleosome Interactions
Ranran Li, Xingcheng Lin
Biochemistry (2025)
Closed Access
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