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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Microbiome differential abundance methods produce different results across 38 datasets
Jacob T. Nearing, Gavin M. Douglas, Molly G. Hayes, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 559

Showing 1-25 of 559 citing articles:

MicrobiomeAnalyst 2.0: comprehensive statistical, functional and integrative analysis of microbiome data
Yao Lü, Guangyan Zhou, Jessica Ewald, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. W1, pp. W310-W318
Open Access | Times Cited: 274
Next-generation sequencing: insights to advance clinical investigations of the microbiome
Caroline R. Wensel, Jennifer L. Pluznick, Steven L. Salzberg, et al.
Journal of Clinical Investigation (2022) Vol. 132, Iss. 7
Open Access | Times Cited: 269
Metagenomics of Parkinson’s disease implicates the gut microbiome in multiple disease mechanisms
Zachary D. Wallen, Ayşe Demirkan, Guy Twa, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 194
Machine learning and deep learning applications in microbiome research
Ricardo Hernández Medina, Svetlana Kutuzova, K Nielsen, et al.
ISME Communications (2022) Vol. 2, Iss. 1
Open Access | Times Cited: 153
The gut microbiota and its biogeography
Giselle McCallum, Carolina Tropini
Nature Reviews Microbiology (2023) Vol. 22, Iss. 2, pp. 105-118
Closed Access | Times Cited: 140
The gut microbiome and hypertension
Joanne A. O’Donnell, Tenghao Zheng, Guillaume Méric, et al.
Nature Reviews Nephrology (2023) Vol. 19, Iss. 3, pp. 153-167
Closed Access | Times Cited: 137
Imbalanced gut microbiota fuels hepatocellular carcinoma development by shaping the hepatic inflammatory microenvironment
Kai Markus Schneider, Antje Mohs, Wenfang Gui, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 135
ggpicrust2: an R package for PICRUSt2 predicted functional profile analysis and visualization
Yang Chen, Jiahao Mai, Xuan Cao, et al.
Bioinformatics (2023) Vol. 39, Iss. 8
Open Access | Times Cited: 128
Host-diet-gut microbiome interactions influence human energy balance: a randomized clinical trial
Karen D. Corbin, Elvis Á. Carnero, Blake Dirks, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 76
Phyllosphere microbiome induces host metabolic defence against rice false-smut disease
Xiaoyu Liu, Haruna Matsumoto, Tianxing Lv, et al.
Nature Microbiology (2023) Vol. 8, Iss. 8, pp. 1419-1433
Closed Access | Times Cited: 71
A citizen-science-enabled catalogue of the vaginal microbiome and associated factors
Sarah Lebeer, Sarah Ahannach, Thies Gehrmann, et al.
Nature Microbiology (2023) Vol. 8, Iss. 11, pp. 2183-2195
Open Access | Times Cited: 66
The best practice for microbiome analysis using R
Tao Wen, Guoqing Niu, Tong Chen, et al.
Protein & Cell (2023) Vol. 14, Iss. 10, pp. 713-725
Open Access | Times Cited: 62
Multi-omic approaches for host-microbiome data integration
Ashwin Chetty, Ran Blekhman
Gut Microbes (2024) Vol. 16, Iss. 1
Open Access | Times Cited: 22
Experimental temperatures shape host microbiome diversity and composition
Jingdi Li, Kieran A. Bates, Kim L. Hoang, et al.
Global Change Biology (2022) Vol. 29, Iss. 1, pp. 41-56
Open Access | Times Cited: 52
Viral biogeography of the mammalian gut and parenchymal organs
Andrey N. Shkoporov, Stephen R. Stockdale, Aonghus Lavelle, et al.
Nature Microbiology (2022) Vol. 7, Iss. 8, pp. 1301-1311
Open Access | Times Cited: 49
Recurrent urinary tract infection and estrogen shape the taxonomic ecology and function of the postmenopausal urogenital microbiome
Michael L. Neugent, Ashwani Kumar, Neha V. Hulyalkar, et al.
Cell Reports Medicine (2022) Vol. 3, Iss. 10, pp. 100753-100753
Open Access | Times Cited: 48
Fecal microbiota and bile acids in IBD patients undergoing screening for colorectal cancer
Aonghus Lavelle, Stéphane Nancey, Jean‐Marie Reimund, et al.
Gut Microbes (2022) Vol. 14, Iss. 1
Open Access | Times Cited: 43
FXR Signaling-Mediated Bile Acid Metabolism Is Critical for Alleviation of Cholesterol Gallstones by Lactobacillus Strains
Xin Ye, Dan Huang, Zhixia Dong, et al.
Microbiology Spectrum (2022) Vol. 10, Iss. 5
Open Access | Times Cited: 42
Investigating differential abundance methods in microbiome data: A benchmark study
Marco Cappellato, Giacomo Baruzzo, Barbara Di Camillo
PLoS Computational Biology (2022) Vol. 18, Iss. 9, pp. e1010467-e1010467
Open Access | Times Cited: 42
Neisseria species as pathobionts in bronchiectasis
Liang Li, Micheál Mac Aogáin, Tengfei Xu, et al.
Cell Host & Microbe (2022) Vol. 30, Iss. 9, pp. 1311-1327.e8
Open Access | Times Cited: 41
coda4microbiome: compositional data analysis for microbiome cross-sectional and longitudinal studies
M. Luz Calle, Meritxell Pujolassos, Antonio Susín
BMC Bioinformatics (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 40
IL-22 alters gut microbiota composition and function to increase aryl hydrocarbon receptor activity in mice and humans
Jordan S. Mar, Naruhisa Ota, Nick D. Pokorzynski, et al.
Microbiome (2023) Vol. 11, Iss. 1
Open Access | Times Cited: 36
Gut microbiota dysbiosis with hepatitis B virus liver disease and association with immune response
Fengna Yan, Qun Zhang, Ke Shi, et al.
Frontiers in Cellular and Infection Microbiology (2023) Vol. 13
Open Access | Times Cited: 35
High-fat diet and estrogen modulate the gut microbiota in a sex-dependent manner in mice
Linnea Hases, Lina Stepanauskaitė, Madeleine Birgersson, et al.
Communications Biology (2023) Vol. 6, Iss. 1
Open Access | Times Cited: 30
Microbial hitchhikers harbouring antimicrobial-resistance genes in the riverine plastisphere
Vinko Zadjelovic, Robyn Wright, Chiara Borsetto, et al.
Microbiome (2023) Vol. 11, Iss. 1
Open Access | Times Cited: 30
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