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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Systematic analysis of low-affinity transcription factor binding site clusters in vitro and in vivo establishes their functional relevance
Amir Shahein, María López‐Malo, Ivan Istomin, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 30

Showing 1-25 of 30 citing articles:

Deciphering the multi-scale, quantitative cis-regulatory code
Seungsoo Kim, Joanna Wysocka
Molecular Cell (2023) Vol. 83, Iss. 3, pp. 373-392
Open Access | Times Cited: 169
Transcription factor interactions explain the context-dependent activity of CRX binding sites
Kaiser Loell, Ryan Z. Friedman, Connie A. Myers, et al.
PLoS Computational Biology (2024) Vol. 20, Iss. 1, pp. e1011802-e1011802
Open Access | Times Cited: 13
Ethanol Oxidation via 12‐Electron Pathway on Spiky Au@AuPd Nanoparticles Assisted by Near‐Infrared Light
Mengmeng Zhang, Xiang Zhang, Min Lv, et al.
Small (2023) Vol. 19, Iss. 18
Closed Access | Times Cited: 16
Competing constraints shape the nonequilibrium limits of cellular decision-making
Nicholas C Lammers, Avi I. Flamholz, Hernán G. García
Proceedings of the National Academy of Sciences (2023) Vol. 120, Iss. 10
Open Access | Times Cited: 15
Rise and SINE: roles of transcription factors and retrotransposons in zygotic genome activation
Pavel Kravchenko, Kikuë Tachibana
Nature Reviews Molecular Cell Biology (2024)
Closed Access | Times Cited: 5
The method in the madness: Transcriptional control from stochastic action at the single-molecule scale
Peter H. Whitney, Timothée Lionnet
Current Opinion in Structural Biology (2024) Vol. 87, pp. 102873-102873
Open Access | Times Cited: 4
Single-cell mapping of regulatory DNA:Protein interactions
Wei-Yu Chi, Sang-Ho Yoon, Levan Mekerishvili, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
G-Quadruplex-Protein Interactome at Human Gene Promoters
Rui-fang Duan, Jinping Zheng, Yu‐hua Hao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Experimentally Multi-Spectroscopic Analysis on the Binding of Anti-Cancer Drug Heptaplatin with Ct-Dna
Mehmet Şerif Bozaslan, Suleyman Can Toksoy, Mustafa Alp Özkul, et al.
(2025)
Closed Access
DNA–Protein Binding is Dominated by Short Anchoring Elements
Hong Chen, Yongping Xu, Hao Ge, et al.
Advanced Science (2025)
Open Access
DNA-guided transcription factor interactions extend human gene regulatory code
Zhiyuan Xie, Ilya L. Sokolov, Maria Osmala, et al.
Nature (2025)
Open Access
Cardiac enhancers: Gateway to the regulatory mechanisms of heart regeneration
Ian J. Begeman, Megan E Guyer, Junsu Kang
Seminars in Cell and Developmental Biology (2025) Vol. 170, pp. 103610-103610
Closed Access
Predictive biophysical neural network modeling of a compendium of in vivo transcription factor DNA binding profiles for Escherichia coli
Patrick Lally, Laura Gómez-Romero, Víctor H. Tierrafría, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Regulation of RNA polymerase II transcription through re-initiation and bursting
Michael Nagel, Dylan J. Taatjes
Molecular Cell (2025) Vol. 85, Iss. 10, pp. 1907-1919
Closed Access
Engineered autonomous dynamic regulation of metabolic flux
Michael Ream, Kristala L. J. Prather
Nature Reviews Bioengineering (2023) Vol. 2, Iss. 3, pp. 233-243
Closed Access | Times Cited: 9
Noncanonical binding of transcription factors: time to revisit specificity?
Md. Abul Hassan Samee
Molecular Biology of the Cell (2023) Vol. 34, Iss. 9
Open Access | Times Cited: 8
Optimisation of TP53 reporters by systematic dissection of synthetic TP53 response elements
Max Trauernicht, Chaitanya Rastogi, Stefano Giustino Manzo, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. 18, pp. 9690-9702
Open Access | Times Cited: 7
Predictive Biophysical Neural Network Modeling of a Compendium ofin vivoTranscription Factor DNA Binding Profiles forEscherichia coli
Patrick Lally, Laura Gómez-Romero, Víctor H. Tierrafría, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Transcriptional responses of cancer cells to heat shock-inducing stimuli involve amplification of robust HSF1 binding
Sayantani Ghosh Dastidar, Bony De Kumar, Bo Lauckner, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 4
Plant Synthetic Promoters
Piotr Szymczyk, Małgorzata Majewska
(2024)
Open Access | Times Cited: 1
Plant Synthetic Promoters
Piotr Szymczyk, Małgorzata Majewska
Applied Sciences (2024) Vol. 14, Iss. 11, pp. 4877-4877
Open Access | Times Cited: 1
Chromatin enables precise and scalable gene regulation with factors of limited specificity
Melinda Liu Perkins, Justin Crocker, Gašper Tkačik
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
A Cryptic Prophage Transcription Factor Drives Phenotypic Changes via Host Gene Regulation
Patrick Lally, Víctor H. Tierrafría, Laura Gómez-Romero, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Regulatory Components for Bacterial Cell-Free Systems Engineering
Pao‐Wan Lee, Sebastian J. Maerkl
ACS Synthetic Biology (2024)
Open Access | Times Cited: 1
EXTRA-seq: a genome-integrated extended massively parallel reporter assay to quantify enhancer-promoter communication
Judith F. Kribelbauer, Vincent Gardeux, Gerard Llimos, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
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