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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Predicting the structural basis of targeted protein degradation by integrating molecular dynamics simulations with structural mass spectrometry
Tom Dixon, Derek MacPherson, Barmak Mostofian, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 66

Showing 1-25 of 66 citing articles:

Functional E3 ligase hotspots and resistance mechanisms to small-molecule degraders
Alexander Hanzl, Ryan Casement, Hana Imrichová, et al.
Nature Chemical Biology (2022) Vol. 19, Iss. 3, pp. 323-333
Open Access | Times Cited: 76
Protein–protein interfaces in molecular glue-induced ternary complexes: classification, characterization, and prediction
Huan Rui, Kate S. Ashton, Jaeki Min, et al.
RSC Chemical Biology (2023) Vol. 4, Iss. 3, pp. 192-215
Open Access | Times Cited: 39
Biophysical and Computational Approaches to Study Ternary Complexes: A ‘Cooperative Relationship’ to Rationalize Targeted Protein Degradation
Jake A. Ward, Carles Perez‐Lopez, Cristina Mayor‐Ruiz
ChemBioChem (2023) Vol. 24, Iss. 10
Open Access | Times Cited: 35
Targeted Protein Degradation: Advances, Challenges, and Prospects for Computational Methods
Barmak Mostofian, Holli‐Joi Martin, Asghar M. Razavi, et al.
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 17, pp. 5408-5432
Open Access | Times Cited: 29
Benchmarking Methods for PROTAC Ternary Complex Structure Prediction
Evianne Rovers, Matthieu Schapira
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 15, pp. 6162-6173
Closed Access | Times Cited: 13
Lysineless HiBiT and NanoLuc Tagging Systems as Alternative Tools for Monitoring Targeted Protein Degradation
Hanfeng Lin, Kristin M. Riching, May Poh Lai, et al.
ACS Medicinal Chemistry Letters (2024) Vol. 15, Iss. 8, pp. 1367-1375
Open Access | Times Cited: 10
Structural Basis of Conformational Dynamics in the PROTAC‐Induced Protein Degradation
Hongtao Zhao
ChemMedChem (2024) Vol. 19, Iss. 14
Open Access | Times Cited: 9
Targeted Protein Degradation: Current and Emerging Approaches for E3 Ligase Deconvolution
Yufeng Xiao, Yaxia Yuan, Yi Liu, et al.
Journal of Medicinal Chemistry (2024)
Closed Access | Times Cited: 8
PROTAC-induced Protein Structural Dynamics in Targeted Protein Degradation
Kingsley Y Wu, Ta I Hung, Chia‐en A. Chang
(2025)
Open Access | Times Cited: 1
Alchemical Transformations and Beyond: Recent Advances and Real-World Applications of Free Energy Calculations in Drug Discovery
Runtong Qian, Jing Xue, You Xu, et al.
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 19, pp. 7214-7237
Closed Access | Times Cited: 8
Mechanism of degrader-targeted protein ubiquitinability
Charlotte Crowe, Mark A. Nakasone, Sarah Chandler, et al.
Science Advances (2024) Vol. 10, Iss. 41
Open Access | Times Cited: 8
Mechanism of degrader-targeted protein ubiquitinability
Charlotte Crowe, Mark A. Nakasone, Sarah Chandler, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 7
Network pharmacology, molecular docking, and molecular dynamics simulation analysis reveal the molecular mechanism of halociline against gastric cancer
Xiangru Zha, Rong Ji, Yang Li, et al.
Molecular Diversity (2024)
Closed Access | Times Cited: 7
AlphaFold-Multimer struggles in predicting PROTAC-mediated protein-protein interfaces
Gilberto P. Pereira, Corentin Gouzien, Paulo C. T. Souza, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 7
Design, synthesis, in silico and biological evaluation of new indole based oxadiazole derivatives targeting estrogen receptor alpha
Kamalpreet Kaur, Harkomal Verma, Prabhakar Gangwar, et al.
Bioorganic Chemistry (2024) Vol. 147, pp. 107341-107341
Closed Access | Times Cited: 6
Development of PROTACs using computational approaches
Jingxuan Ge, Chang-Yu Hsieh, Meijing Fang, et al.
Trends in Pharmacological Sciences (2024)
Closed Access | Times Cited: 6
Modeling the Effect of Cooperativity in Ternary Complex Formation and Targeted Protein Degradation Mediated by Heterobifunctional Degraders
Daniel J. Park, Jesús A. Izaguirre, Rory Coffey, et al.
ACS Bio & Med Chem Au (2022) Vol. 3, Iss. 1, pp. 74-86
Open Access | Times Cited: 26
An Efficient Path Classification Algorithm Based on Variational Autoencoder to Identify Metastable Path Channels for Complex Conformational Changes
Yunrui Qiu, Michael S. O’Connor, Mingyi Xue, et al.
Journal of Chemical Theory and Computation (2023) Vol. 19, Iss. 14, pp. 4728-4742
Open Access | Times Cited: 15
Rational Prediction of PROTAC-Compatible Protein–Protein Interfaces by Molecular Docking
Gilberto P. Pereira, Brian Jiménez‐García, Riccardo Pellarin, et al.
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 21, pp. 6823-6833
Open Access | Times Cited: 15
Identification of 1,3,4-oxadiazoles as tubulin-targeted anticancer agents: a combined field-based 3D-QSAR, pharmacophore model-based virtual screening, molecular docking, molecular dynamics simulation, and density functional theory calculation approach
Agnidipta Das, Manaswini Sarangi, Kailash Jangid, et al.
Journal of Biomolecular Structure and Dynamics (2023) Vol. 42, Iss. 19, pp. 10323-10341
Closed Access | Times Cited: 13
Advances in designing ternary complexes: Integrating in-silico and biochemical methods for PROTAC optimisation in target protein degradation
Shareef Shaik, Prasanna Kumar Reddy Gayam, Manish Chaudhary, et al.
Bioorganic Chemistry (2024) Vol. 153, pp. 107868-107868
Open Access | Times Cited: 5
The potential of cross-linking mass spectrometry in the development of protein–protein interaction modulators
Max Ruwolt, Ilaria Piazza, Fan Liu
Current Opinion in Structural Biology (2023) Vol. 82, pp. 102648-102648
Open Access | Times Cited: 11
Markov State Models with Weighted Ensemble Simulation: How to Eliminate the Trajectory Merging Bias
Samik Bose, Ceren Kılınç, Alex Dickson
Journal of Chemical Theory and Computation (2025)
Open Access
Computational approaches to aid PROTAC drug discovery
Sohini Chakraborti, Kirsten McAulay
Elsevier eBooks (2025)
Closed Access
A Comprehensive Primer and Review of PROTACs and Their In Silico Design
Jacopo Zattoni, Paola Vottero, Gea Carena, et al.
Computer Methods and Programs in Biomedicine (2025) Vol. 264, pp. 108687-108687
Open Access
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