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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

De novo analysis of bulk RNA-seq data at spatially resolved single-cell resolution
Jie Liao, Jingyang Qian, Fang Yin, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 43

Showing 1-25 of 43 citing articles:

Integrative multi-omics and systems bioinformatics in translational neuroscience: A data mining perspective
Lance M. O’Connor, Blake A. O’Connor, Su Bin Lim, et al.
Journal of Pharmaceutical Analysis (2023) Vol. 13, Iss. 8, pp. 836-850
Open Access | Times Cited: 48
A guidebook of spatial transcriptomic technologies, data resources and analysis approaches
Liangchen Yue, Feng Liu, Jiongsong Hu, et al.
Computational and Structural Biotechnology Journal (2023) Vol. 21, pp. 940-955
Open Access | Times Cited: 37
Reconstruction of the cell pseudo-space from single-cell RNA sequencing data with scSpace
Jingyang Qian, Jie Liao, Ziqi Liu, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 25
OmicVerse: a framework for bridging and deepening insights across bulk and single-cell sequencing
Zehua Zeng, Yuqing Ma, Lei Hu, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 14
scRank infers drug-responsive cell types from untreated scRNA-seq data using a target-perturbed gene regulatory network
Chengyu Li, Xin Shao, Shujing Zhang, et al.
Cell Reports Medicine (2024) Vol. 5, Iss. 6, pp. 101568-101568
Open Access | Times Cited: 10
Dissecting the brain with spatially resolved multi-omics
Yijia Fangma, Mengting Liu, Jie Liao, et al.
Journal of Pharmaceutical Analysis (2023) Vol. 13, Iss. 7, pp. 694-710
Open Access | Times Cited: 21
Laser capture microdissection for biomedical research: towards high-throughput, multi-omics, and single-cell resolution
Wenbo Guo, Yining Hu, Jingyang Qian, et al.
Journal of genetics and genomics/Journal of Genetics and Genomics (2023) Vol. 50, Iss. 9, pp. 641-651
Closed Access | Times Cited: 21
Metabolic heterogeneity in clear cell renal cell carcinoma revealed by single-cell RNA sequencing and spatial transcriptomics
Guan‐Wen Yang, Jiangting Cheng, Jiayi Xu, et al.
Journal of Translational Medicine (2024) Vol. 22, Iss. 1
Open Access | Times Cited: 8
Spatial multiplexing and omics
Julienne L. Carstens, Santhoshi Krishnan, Arvind Rao, et al.
Nature Reviews Methods Primers (2024) Vol. 4, Iss. 1
Closed Access | Times Cited: 8
The molecular subtypes of autoimmune diseases
Xiangshu Cheng, Xin Meng, Rui Chen, et al.
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 1348-1363
Open Access | Times Cited: 6
Integrated analysis of single-cell RNA-seq and bulk RNA-seq reveals immune suppression subtypes and establishes a novel signature for determining the prognosis in lung adenocarcinoma
Shengqiang Mao, Yilong Wang, Ningning Chao, et al.
Cellular Oncology (2024) Vol. 47, Iss. 5, pp. 1697-1713
Closed Access | Times Cited: 6
Whole genome deconvolution unveils Alzheimer’s resilient epigenetic signature
Eloïse Berson, Anjali Sreenivas, Thanaphong Phongpreecha, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 15
Streamlining spatial omics data analysis with Pysodb
Senlin Lin, Fangyuan Zhao, Zihan Wu, et al.
Nature Protocols (2023) Vol. 19, Iss. 3, pp. 831-895
Closed Access | Times Cited: 12
Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery
Boyan Bonev, Gonçalo Castelo‐Branco, Fei Chen, et al.
Nature Neuroscience (2024) Vol. 27, Iss. 12, pp. 2292-2309
Closed Access | Times Cited: 4
M-GENE: Multiview genes expression network ensemble for bone metabolism-related gene classification
Keyi Yu, Weilong Tan, Jirong Ge, et al.
Neurocomputing (2025) Vol. 622, pp. 129318-129318
Closed Access
Technology Spotlight Surface Target Discovery for Blood Cancer Immunotherapies
Bonell Patiño-Escobar, Lucy Perez-Lugo, Arun P. Wiita
The Hematologist (2025) Vol. 22, Iss. 1
Open Access
HDAC9-mediated deacetylation of CALML6 promotes excessive proliferation of glomerular mesangial cells in IgA nephropathy
Xingxing Zhuang, Fei Xiao, Feihu Chen, et al.
Clinical and Experimental Nephrology (2025)
Closed Access
Single-cell RNA sequencing in autoimmune diseases: New insights and challenges
Jialing Huang, Yuelin Hu, Shuqing Wang, et al.
Pharmacology & Therapeutics (2025), pp. 108807-108807
Closed Access
gdGSE: an algorithm to evaluate pathway enrichment by discretizing gene expression values
Jiangti Luo, Qiqi Lu, Mengjiao He, et al.
Computational and Structural Biotechnology Journal (2025)
Open Access
Promise of spatially resolved omics for tumor research
Yanhe Zhou, Xinyi Jiang, Xiangyi Wang, et al.
Journal of Pharmaceutical Analysis (2023) Vol. 13, Iss. 8, pp. 851-861
Open Access | Times Cited: 10
OmicVerse: A single pipeline for exploring the entire transcriptome universe
Zehua Zeng, Yuqing Ma, Lei Hu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 9
Simulating multiple variability in spatially resolved transcriptomics with scCube
Jingyang Qian, Hudong Bao, Xin Shao, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 3
spatialHeatmap: visualizing spatial bulk and single-cell assays in anatomical images
Jianhai Zhang, Le Zhang, Brendan Gongol, et al.
NAR Genomics and Bioinformatics (2024) Vol. 6, Iss. 1
Open Access | Times Cited: 2
Empowering artificial intelligence in characterizing the human primary pacemaker of the heart at single cell resolution
Alexandru Chelu, Elizabeth J. Cartwright, Halina Dobrzynski
Scientific Reports (2024) Vol. 14, Iss. 1
Open Access | Times Cited: 2
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