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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Spatial-ID: a cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding
Rongbo Shen, Lin Liu, Zihan Wu, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 52

Showing 1-25 of 52 citing articles:

Single-cell spatial transcriptome reveals cell-type organization in the macaque cortex
Ao Chen, Yidi Sun, Ying Lei, et al.
Cell (2023) Vol. 186, Iss. 17, pp. 3726-3743.e24
Open Access | Times Cited: 112
Spatiotemporal omics for biology and medicine
Longqi Liu, Ao Chen, Yuxiang Li, et al.
Cell (2024) Vol. 187, Iss. 17, pp. 4488-4519
Closed Access | Times Cited: 27
MENDER: fast and scalable tissue structure identification in spatial omics data
Zhiyuan Yuan
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 21
Spatial transcriptomics in development and disease
Ran Zhou, Gaoxia Yang, Yan Zhang, et al.
Molecular Biomedicine (2023) Vol. 4, Iss. 1
Open Access | Times Cited: 27
Lost in space: what single-cell RNA sequencing cannot tell you
Kelvin Adema, Michael A. Schon, Michael D. Nodine, et al.
Trends in Plant Science (2024) Vol. 29, Iss. 9, pp. 1018-1028
Open Access | Times Cited: 11
Spotiphy enables single-cell spatial whole transcriptomics across an entire section
Jiyuan Yang, Ziqian Zheng, Yun Jiao, et al.
Nature Methods (2025)
Open Access | Times Cited: 1
Attention-guided variational graph autoencoders reveal heterogeneity in spatial transcriptomics
Lixin Lei, Kaitai Han, Zijun Wang, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 3
Open Access | Times Cited: 7
Spatiotemporal transcriptomic atlas of rhizome formation in Oryza longistaminata
Xiaoping Lian, Liyuan Zhong, Yixuan Bai, et al.
Plant Biotechnology Journal (2024) Vol. 22, Iss. 6, pp. 1652-1668
Open Access | Times Cited: 6
Stereopy: modeling comparative and spatiotemporal cellular heterogeneity via multi-sample spatial transcriptomics
Shuangsang Fang, Mengyang Xu, Lei Cao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 16
CellBin: a highly accurate single-cell gene expression processing pipeline for high-resolution spatial transcriptomics
Mei Li, Huanlin Liu, Qiang Kang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 13
Deciphering spatial domains from spatially resolved transcriptomics with Siamese graph autoencoder
Lei Cao, Chao Yang, Luni Hu, et al.
GigaScience (2024) Vol. 13
Open Access | Times Cited: 5
Current opinions on large cellular models
Minsheng Hao, Lei Wei, Fan Yang, et al.
Quantitative Biology (2024) Vol. 12, Iss. 4, pp. 433-443
Open Access | Times Cited: 5
A Review of the Application of Spatial Transcriptomics in Neuroscience
Le Zhang, Zhenqi Xiong, Ming Xiao
Interdisciplinary Sciences Computational Life Sciences (2024) Vol. 16, Iss. 2, pp. 243-260
Closed Access | Times Cited: 4
EAGS: efficient and adaptive Gaussian smoothing applied to high-resolved spatial transcriptomics
Tongxuan Lv, Ying Zhang, Mei Li, et al.
GigaScience (2024) Vol. 13
Open Access | Times Cited: 4
Applications for single-cell and spatial transcriptomics in plant research
Qing Sang, Fanjiang Kong
New Crops (2024) Vol. 1, pp. 100025-100025
Open Access | Times Cited: 4
spatiAlign: an unsupervised contrastive learning model for data integration of spatially resolved transcriptomics
Chao Zhang, Lin Liu, Ying Zhang, et al.
GigaScience (2024) Vol. 13
Open Access | Times Cited: 4
Antibody-based delivery of interleukin-2 modulates the immunosuppressive tumor microenvironment and achieves cure in pancreatic ductal adenocarcinoma syngeneic mice
Carmine Carbone, R. De Luca, Emanuele Puca, et al.
Journal of Experimental & Clinical Cancer Research (2025) Vol. 44, Iss. 1
Open Access
Benchmarking cell type annotation methods for 10x Xenium spatial transcriptomics data
Jinming Cheng, Xinyi Jin, Gordon K. Smyth, et al.
BMC Bioinformatics (2025) Vol. 26, Iss. 1
Open Access
Single-cell spatial transcriptome reveals pathological features of human hippocampus with sclerosis
Lifang Wang, Xingjie Li, Yuyang Liu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
LETSmix: a spatially informed and learning-based domain adaptation method for cell-type deconvolution in spatial transcriptomics
Yangen Zhan, Yongbing Zhang, Zheqi Hu, et al.
Genome Medicine (2025) Vol. 17, Iss. 1
Open Access
stAI: a deep learning-based model for missing gene imputation and cell-type annotation of spatial transcriptomics
Guangtian Zou, Qunlun Shen, Limin Li, et al.
Nucleic Acids Research (2025) Vol. 53, Iss. 5
Open Access
Single-cell spatial transcriptomic atlas of the whole mouse brain
Lei Han, Zhen Liu, Zehua Jing, et al.
Neuron (2025)
Closed Access
Network-based multi-omics integrative analysis methods in drug discovery: a systematic review
Wei Jiang, Weicai Ye, Xiao-Ming Tan, et al.
BioData Mining (2025) Vol. 18, Iss. 1
Open Access
Molecular pathways and diagnosis in spatially resolved Alzheimer’s hippocampal atlas
Pan Wang, Lei Han, Lifang Wang, et al.
Neuron (2025)
Closed Access
Single-cell spatial transcriptome atlas and whole-brain connectivity of the macaque claustrum
Ying Lei, Yuxuan Liu, Mingli Wang, et al.
Cell (2025)
Open Access
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