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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Benchmarking strategies for cross-species integration of single-cell RNA sequencing data
Yuyao Song, Zhichao Miao, Alvis Brāzma, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 57

Showing 1-25 of 57 citing articles:

An oncogenic phenoscape of colonic stem cell polarization
Xiao Qin, Ferran Cardoso Rodriguez, Jahangir Sufi, et al.
Cell (2023) Vol. 186, Iss. 25, pp. 5554-5568.e18
Open Access | Times Cited: 44
Harmonized cross-species cell atlases of trigeminal and dorsal root ganglia
Shamsuddin A. Bhuiyan, Mengyi Xu, Lite Yang, et al.
Science Advances (2024) Vol. 10, Iss. 25
Open Access | Times Cited: 44
Toward universal cell embeddings: integrating single-cell RNA-seq datasets across species with SATURN
Yanay Rosen, Maria Brbić, Yusuf Roohani, et al.
Nature Methods (2024) Vol. 21, Iss. 8, pp. 1492-1500
Open Access | Times Cited: 40
AI-driven multi-omics integration for multi-scale predictive modeling of genotype-environment-phenotype relationships
You Wu, Lei Xie
Computational and Structural Biotechnology Journal (2025) Vol. 27, pp. 265-277
Open Access | Times Cited: 5
Enhancer-driven cell type comparison reveals similarities between the mammalian and bird pallium
Nikolai Hecker, Niklas Kempynck, David Mauduit, et al.
Science (2025) Vol. 387, Iss. 6735
Open Access | Times Cited: 2
Single-cell analysis identifies distinct macrophage phenotypes associated with prodisease and proresolving functions in the endometriotic niche
Yasmin Henlon, Kavita Panir, Iona McIntyre, et al.
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 38
Open Access | Times Cited: 9
Evaluating the Utilities of Foundation Models in Single-cell Data Analysis
Tianyu Liu, Kexing Li, Yuge Wang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 19
Towards Universal Cell Embeddings: Integrating Single-cell RNA-seq Datasets across Species with SATURN
Yanay Rosen, Maria Brbić, Yusuf Roohani, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 17
SIMS: A deep-learning label transfer tool for single-cell RNA sequencing analysis
Jesus Gonzalez-Ferrer, Julian Lehrer, Ash O’Farrell, et al.
Cell Genomics (2024) Vol. 4, Iss. 6, pp. 100581-100581
Open Access | Times Cited: 7
Advances and applications in single-cell and spatial genomics
Jingjing Wang, Fang Ye, Haoxi Chai, et al.
Science China Life Sciences (2024)
Closed Access | Times Cited: 7
Species-agnostic transfer learning for cross-species transcriptomics data integration without gene orthology
Youngjun Park, Nils Muttray, Anne-Christin Hauschild
Briefings in Bioinformatics (2024) Vol. 25, Iss. 2
Open Access | Times Cited: 5
Single-cell analysis identifies distinct macrophage phenotypes associated with pro-disease and pro-resolving functions in the endometriotic niche
Yasmin Henlon, Kavita Panir, Iona McIntyre, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
Enhancer-driven cell type comparison reveals similarities between the mammalian and bird pallium
Nikolai Hecker, Niklas Kempynck, David Mauduit, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
Revisiting Cardiac Biology in the Era of Single Cell and Spatial Omics
Jack A. Palmer, Nadia Rosenthal, Sarah A. Teichmann, et al.
Circulation Research (2024) Vol. 134, Iss. 12, pp. 1681-1702
Open Access | Times Cited: 5
Multi-species atlas resolves an axolotl limb development and regeneration paradox
Jixing Zhong, Rita Aires, Georgios Tsissios, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 11
CATD: a reproducible pipeline for selecting cell-type deconvolution methods across tissues
Anna Vathrakokoili Pournara, Zhichao Miao, Ozgur Yilimaz Beker, et al.
Bioinformatics Advances (2024) Vol. 4, Iss. 1
Open Access | Times Cited: 4
Benchmarking cross-species single-cell RNA-seq data integration methods: towards a cell type tree of life
Zhong Hua-wen, Wenkai Han, David Gómez-Cabrero, et al.
Nucleic Acids Research (2025) Vol. 53, Iss. 1
Open Access
GFETM: Genome Foundation-Based Embedded Topic Model for scATAC-seq Modeling
Yimin Fan, Adrien Osakwe, Han Shi, et al.
(2025)
Closed Access
Srsf3-Dependent APA Drives Macrophage Maturation and Limits Atherosclerosis
Xian‐Wen Yang, Xin Zhang, Yaru Tian, et al.
Circulation Research (2025)
Closed Access
Distinct features of the regenerating heart uncovered through comparative single-cell profiling
Clayton M. Carey, Hailey L. Hollins, A. Schmid, et al.
Biology Open (2024) Vol. 13, Iss. 4
Open Access | Times Cited: 3
Single-cell profiling of the amphioxus digestive tract reveals conservation of endocrine cells in chordates
Yichen Dai, Rongrong Pan, Qi Pan, et al.
Science Advances (2024) Vol. 10, Iss. 51
Open Access | Times Cited: 3
Identification and comparison of orthologous cell types from primate embryoid bodies shows limits of marker gene transferability
Philipp Janssen, Jessica Jocher, Beate Vieth, et al.
(2025)
Open Access
Identification and comparison of orthologous cell types from primate embryoid bodies shows limits of marker gene transferability
Philipp Janssen, Jessica Jocher, Beate Vieth, et al.
(2025)
Open Access
Improved integration of single-cell transcriptome data demonstrates common and unique signatures of heart failure in mice and humans
Mariano Ruz Jurado, Lukas Tombor, Mani Arsalan, et al.
GigaScience (2024) Vol. 13
Open Access | Times Cited: 3
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