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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

A map of cis-regulatory elements and 3D genome structures in zebrafish
Hongbo Yang, Yu Luan, Tingting Liu, et al.
Nature (2020) Vol. 588, Iss. 7837, pp. 337-343
Open Access | Times Cited: 121

Showing 1-25 of 121 citing articles:

EagleC: A deep-learning framework for detecting a full range of structural variations from bulk and single-cell contact maps
Xiaotao Wang, Yu Luan, Feng Yue
Science Advances (2022) Vol. 8, Iss. 24
Open Access | Times Cited: 128
Comparative analysis of genome-scale, base-resolution DNA methylation profiles across 580 animal species
Johanna Klughammer, Daria Romanovskaia, Amelie Nemc, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 58
Chromatin architecture transitions from zebrafish sperm through early embryogenesis
Candice L. Wike, Yixuan Guo, Mengyao Tan, et al.
Genome Research (2021) Vol. 31, Iss. 6, pp. 981-994
Open Access | Times Cited: 64
Zebrafish transposable elements show extensive diversification in age, genomic distribution, and developmental expression
Ni‐Chen Chang, Quirze Rovira, Jonathan N. Wells, et al.
Genome Research (2022) Vol. 32, Iss. 7, pp. 1408-1423
Open Access | Times Cited: 64
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements
Damir Baranas̆ić, Matthias Hörtenhuber, Piotr J. Balwierz, et al.
Nature Genetics (2022) Vol. 54, Iss. 7, pp. 1037-1050
Open Access | Times Cited: 63
Bibliometric review of ATAC-Seq and its application in gene expression
Li-Heng Luo, Michael Gribskov, Sufang Wang
Briefings in Bioinformatics (2022) Vol. 23, Iss. 3
Open Access | Times Cited: 44
Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes
Alessa R. Ringel, Quentin Szabo, Andrea M. Chiariello, et al.
Cell (2022) Vol. 185, Iss. 20, pp. 3689-3704.e21
Open Access | Times Cited: 41
Ultra-long-range interactions between active regulatory elements
Elias T. Friman, Ilya M. Flyamer, Davide Marenduzzo, et al.
Genome Research (2023) Vol. 33, Iss. 8, pp. 1269-1283
Open Access | Times Cited: 27
Identification and regulation of a novel leptin receptor-linked enhancer during zebrafish ventricle regeneration
Qi Li, Yan Zhao, Fang Geng, et al.
Life Sciences (2025) Vol. 363, pp. 123415-123415
Closed Access | Times Cited: 1
Enhancer selection dictates gene expression responses in remote organs during tissue regeneration
Fei Sun, Jianhong Ou, Adam R. Shoffner, et al.
Nature Cell Biology (2022) Vol. 24, Iss. 5, pp. 685-696
Open Access | Times Cited: 34
Multi-omics profiling visualizes dynamics of cardiac development and functions
Yayun Gu, Yan Zhou, Sihan Ju, et al.
Cell Reports (2022) Vol. 41, Iss. 13, pp. 111891-111891
Open Access | Times Cited: 31
Pan-3D genome analysis reveals structural and functional differentiation of soybean genomes
Lingbin Ni, Yucheng Liu, Xin Ma, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 22
Lactobacillus gasseri LGV03 isolated from the cervico-vagina of HPV-cleared women modulates epithelial innate immune responses and suppresses the growth of HPV-positive human cervical cancer cells
Qiong Gao, Tao Fan, Siying Luo, et al.
Translational Oncology (2023) Vol. 35, pp. 101714-101714
Open Access | Times Cited: 18
A maternal-to-zygotic-transition gene block on the zebrafish sex chromosome
Catherine Wilson, John H. Postlethwait
G3 Genes Genomes Genetics (2024) Vol. 14, Iss. 5
Open Access | Times Cited: 6
Bisphenol analogues induced metabolic effects through eliciting intestinal cell heterogeneous response
Xiyan Mu, Suzhen Qi, Hui Wang, et al.
Environment International (2022) Vol. 165, pp. 107287-107287
Open Access | Times Cited: 26
Mapping the chromatin accessibility landscape of zebrafish embryogenesis at single-cell resolution by SPATAC-seq
Keyong Sun, Xin Liu, Runda Xu, et al.
Nature Cell Biology (2024) Vol. 26, Iss. 7, pp. 1187-1199
Closed Access | Times Cited: 5
Epigenomic analysis reveals prevalent contribution of transposable elements to cis-regulatory elements, tissue-specific expression, and alternative promoters in zebrafish
Hyung Joo Lee, Yiran Hou, Ju Heon Maeng, et al.
Genome Research (2022) Vol. 32, Iss. 7, pp. 1424-1436
Open Access | Times Cited: 19
NAC1 modulates autoimmunity by suppressing regulatory T cell–mediated tolerance
Jinming Yang, Yijie Ren, Anil Kumar, et al.
Science Advances (2022) Vol. 8, Iss. 26
Open Access | Times Cited: 19
Upf3a but not Upf1 mediates the genetic compensation response induced by leg1 deleterious mutations in an H3K4me3-independent manner
Aixuan Xie, Zhipeng Ma, Jinyang Wang, et al.
Cell Discovery (2023) Vol. 9, Iss. 1
Open Access | Times Cited: 11
A screen for regeneration-associated silencer regulatory elements in zebrafish
Kazunori Ando, Jianhong Ou, John Thompson, et al.
Developmental Cell (2024) Vol. 59, Iss. 5, pp. 676-691.e5
Closed Access | Times Cited: 4
DNA Methylation of Somatic Tissues in Oysters is Influenced by Sex and Heredity
Wen Teng, Chengxun Xu, Shikai Liu, et al.
Marine Biotechnology (2025) Vol. 27, Iss. 1
Closed Access
Common and specific gene regulatory programs in zebrafish caudal fin regeneration at single-cell resolution
Yujie Chen, Yiran Hou, Qi Zeng, et al.
Genome Research (2025)
Closed Access
Lampbrush chromosomes of Danio rerio
Dmitrij Dedukh, Tatiana Kulikova, Marina A. Dobrovolskaia, et al.
Chromosome Research (2025) Vol. 33, Iss. 1
Closed Access
Uncovering the chromatin-mediated transcriptional regulatory network governing cold stress responses in fish immune cells
He Jiao, Songqian Huang, Minghao Zhang, et al.
Journal of genetics and genomics/Journal of Genetics and Genomics (2025)
Closed Access
m6A‐mRNA Reader YTHDF2 Identified as a Potential Risk Gene in Autism With Disproportionate Megalencephaly
Sierra S. Nishizaki, Nicholas K. Haghani, Gabriana N. La, et al.
Autism Research (2025)
Open Access
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