OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Affinity-optimizing enhancer variants disrupt development
Fabian Lim, Joe J. Solvason, Genevieve E. Ryan, et al.
Nature (2024) Vol. 626, Iss. 7997, pp. 151-159
Open Access | Times Cited: 53

Showing 1-25 of 53 citing articles:

Deciphering the multi-scale, quantitative cis-regulatory code
Seungsoo Kim, Joanna Wysocka
Molecular Cell (2023) Vol. 83, Iss. 3, pp. 373-392
Open Access | Times Cited: 169

Multiplex profiling of developmental cis-regulatory elements with quantitative single-cell expression reporters
Jean‐Benoît Lalanne, Samuel G. Regalado, Silvia Domcke, et al.
Nature Methods (2024) Vol. 21, Iss. 6, pp. 983-993
Open Access | Times Cited: 20

Real-time visualization of reconstituted transcription reveals RNA polymerase II activation mechanisms at single promoters
Megan Palacio, Dylan J. Taatjes
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access | Times Cited: 2

Transfer learning reveals sequence determinants of the quantitative response to transcription factor dosage
Sahin Naqvi, Seungsoo Kim, Saman Tabatabaee, et al.
Cell Genomics (2025), pp. 100780-100780
Open Access | Times Cited: 2

Mutations to transcription factor MAX allosterically increase DNA selectivity by altering folding and binding pathways
Renee Hastings, Arjun K. Aditham, Nicole DelRosso, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access | Times Cited: 1

Single-nucleotide variants within heart enhancers increase binding affinity and disrupt heart development
Granton A. Jindal, Alexis Bantle, Joe J. Solvason, et al.
Developmental Cell (2023) Vol. 58, Iss. 21, pp. 2206-2216.e5
Open Access | Times Cited: 23

Transient interactions modulate the affinity of NF-κB transcription factors for DNA
Tianjie Li, Shandy Shahabi, Tapan Biswas, et al.
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 23
Open Access | Times Cited: 6

A benchmarked, high-efficiency prime editing platform for multiplexed dropout screening
Ann Cirincione, Danny Simpson, Weihao Yan, et al.
Nature Methods (2024)
Open Access | Times Cited: 6

Two redundant transcription factor binding sites in a single enhancer are essential for mammalian sex determination
Meshi Ridnik, Elisheva Abberbock, Veronica Alipov, et al.
Nucleic Acids Research (2024) Vol. 52, Iss. 10, pp. 5514-5528
Open Access | Times Cited: 4

A community effort to optimize sequence-based deep learning models of gene regulation
Abdul Muntakim Rafi, Daria Nogina, Dmitry Penzar, et al.
Nature Biotechnology (2024)
Open Access | Times Cited: 4

Memory CD4+ T cells sequentially restructure their 3D genome during stepwise activation
Alexander I. Ward, Jose I. de las Heras, Eric C. Schirmer, et al.
Frontiers in Cell and Developmental Biology (2025) Vol. 13
Open Access

Structural insights into the recognition of native nucleosomes by pioneer transcription factors
Bing‐Rui Zhou, Benjamin Orris, R. Guan, et al.
Current Opinion in Structural Biology (2025) Vol. 92, pp. 103024-103024
Closed Access

Dissecting cardiovascular disease-associated noncoding genetic variants using human iPSC models
Saif Dababneh, Hosna Babini, Verónica Jiménez-Sábado, et al.
Stem Cell Reports (2025), pp. 102467-102467
Open Access

DNA-guided transcription factor interactions extend human gene regulatory code
Zhiyuan Xie, Ilya L. Sokolov, Maria Osmala, et al.
Nature (2025)
Open Access

Cardiac enhancers: Gateway to the regulatory mechanisms of heart regeneration
Ian J. Begeman, Megan E Guyer, Junsu Kang
Seminars in Cell and Developmental Biology (2025) Vol. 170, pp. 103610-103610
Closed Access

Evolving Rel
Myong‐Hee Sung, Ranjan Sen
Nature Immunology (2025) Vol. 26, Iss. 5, pp. 642-643
Closed Access

Leveraging Chicken Embryos for Studying Human Enhancers
Ruth M. Williams
Developmental Biology (2025)
Closed Access

Regulation of RNA polymerase II transcription through re-initiation and bursting
Michael Nagel, Dylan J. Taatjes
Molecular Cell (2025) Vol. 85, Iss. 10, pp. 1907-1919
Closed Access

The continuum of transcription factor affinities
Carl G. de Boer
Nature Reviews Genetics (2024) Vol. 25, Iss. 6, pp. 378-378
Closed Access | Times Cited: 3

Transfer learning reveals sequence determinants of the quantitative response to transcription factor dosage
Sahin Naqvi, Seungsoo Kim, Saman Tabatabaee, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2

Cooperativity among clustered κB sites within promoters and enhancers dictates transcriptional specificity of NF-κB RelA along with specific cofactors
Shandy Shahabi, Tapan Biswas, Yuting Shen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2

Optimization of the Irf8 +32-kb enhancer disrupts dendritic cell lineage segregation
Feiya Ou, Tiantian Liu, Pritesh Desai, et al.
Nature Immunology (2024) Vol. 25, Iss. 11, pp. 2043-2056
Closed Access | Times Cited: 2

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