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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses
Yuanqiang Zou, Wenbin Xue, Guangwen Luo, et al.
Nature Biotechnology (2019) Vol. 37, Iss. 2, pp. 179-185
Open Access | Times Cited: 486

Showing 1-25 of 486 citing articles:

Microbiome definition re-visited: old concepts and new challenges
Gabriele Berg, Daria Rybakova, Doreen Fischer, et al.
Microbiome (2020) Vol. 8, Iss. 1
Open Access | Times Cited: 1649
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
Francesco Beghini, Lauren J. McIver, Aitor Blanco‐Míguez, et al.
eLife (2021) Vol. 10
Open Access | Times Cited: 1417
A unified catalog of 204,938 reference genomes from the human gut microbiome
Alexandre Almeida, Stephen Nayfach, Miguel Boland, et al.
Nature Biotechnology (2020) Vol. 39, Iss. 1, pp. 105-114
Open Access | Times Cited: 993
Stunted microbiota and opportunistic pathogen colonization in caesarean-section birth
Yan Shao, Samuel C. Forster, Evdokia Tsaliki, et al.
Nature (2019) Vol. 574, Iss. 7776, pp. 117-121
Open Access | Times Cited: 818
New insights from uncultivated genomes of the global human gut microbiome
Stephen Nayfach, Zhou Jason Shi, R. Seshadri, et al.
Nature (2019) Vol. 568, Iss. 7753, pp. 505-510
Open Access | Times Cited: 647
A practical guide to amplicon and metagenomic analysis of microbiome data
Yongxin Liu, Yuan Qin, Tong Chen, et al.
Protein & Cell (2020) Vol. 12, Iss. 5, pp. 315-330
Open Access | Times Cited: 625
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
Francesco Asnicar, Andrew Maltez Thomas, Francesco Beghini, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 586
Enlightening the taxonomy darkness of human gut microbiomes with a cultured biobank
Chang Liu, Meng-Xuan Du, Rexiding Abuduaini, et al.
Microbiome (2021) Vol. 9, Iss. 1
Open Access | Times Cited: 530
Massive expansion of human gut bacteriophage diversity
Luis F. Camarillo-Guerrero, Alexandre Almeida, Guillermo Rangel-Piñeros, et al.
Cell (2021) Vol. 184, Iss. 4, pp. 1098-1109.e9
Open Access | Times Cited: 478
Intestinal Microbiota in Cardiovascular Health and Disease
W.H. Wilson Tang, Fredrik Bäckhed, Ulf Landmesser, et al.
Journal of the American College of Cardiology (2019) Vol. 73, Iss. 16, pp. 2089-2105
Open Access | Times Cited: 390
CNSA: a data repository for archiving omics data
Xueqin Guo, Fengzhen Chen, Fei Gao, et al.
Database (2020) Vol. 2020
Open Access | Times Cited: 367
A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research
Mathilde Poyet, Mathieu Groussin, Sean M. Gibbons, et al.
Nature Medicine (2019) Vol. 25, Iss. 9, pp. 1442-1452
Closed Access | Times Cited: 342
A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity
David Wylensek, Thomas C. A. Hitch, Thomas Riedel, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 334
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
Qiyun Zhu, Uyen Mai, Wayne Pfeiffer, et al.
Nature Communications (2019) Vol. 10, Iss. 1
Open Access | Times Cited: 296
Microbiome-based therapeutics
Matthew T. Sorbara, Eric G. Pamer
Nature Reviews Microbiology (2022) Vol. 20, Iss. 6, pp. 365-380
Closed Access | Times Cited: 291
Applying the core microbiome to understand host–microbe systems
Alice Risely
Journal of Animal Ecology (2020) Vol. 89, Iss. 7, pp. 1549-1558
Open Access | Times Cited: 289
Pan-genomics in the human genome era
Rachel M. Sherman, Steven L. Salzberg
Nature Reviews Genetics (2020) Vol. 21, Iss. 4, pp. 243-254
Open Access | Times Cited: 273
Gut microbiome-related effects of berberine and probiotics on type 2 diabetes (the PREMOTE study)
Yifei Zhang, Yanyun Gu, Huahui Ren, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 273
phyloFlash: Rapid Small-Subunit rRNA Profiling and Targeted Assembly from Metagenomes
Harald R. Gruber‐Vodicka, Brandon Kwee Boon Seah, Elmar Pruesse
mSystems (2020) Vol. 5, Iss. 5
Open Access | Times Cited: 262
Elevated rates of horizontal gene transfer in the industrialized human microbiome
Mathieu Groussin, Mathilde Poyet, Ainara Sistiaga, et al.
Cell (2021) Vol. 184, Iss. 8, pp. 2053-2067.e18
Open Access | Times Cited: 260
Cholesterol Metabolism by Uncultured Human Gut Bacteria Influences Host Cholesterol Level
Douglas J. Kenny, Damian R. Plichta, Dmitry Shungin, et al.
Cell Host & Microbe (2020) Vol. 28, Iss. 2, pp. 245-257.e6
Open Access | Times Cited: 220
Estimating maximal microbial growth rates from cultures, metagenomes, and single cells via codon usage patterns
JL Weissman, Shengwei Hou, Jed A. Fuhrman
Proceedings of the National Academy of Sciences (2021) Vol. 118, Iss. 12
Open Access | Times Cited: 201
Pangenomics Comes of Age: From Bacteria to Plant and Animal Applications
Agnieszka A. Golicz, Philipp E. Bayer, Prem L. Bhalla, et al.
Trends in Genetics (2019) Vol. 36, Iss. 2, pp. 132-145
Open Access | Times Cited: 192
Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes
Xuefeng Peng, St. Elmo Wilken, Thomas S. Lankiewicz, et al.
Nature Microbiology (2021) Vol. 6, Iss. 4, pp. 499-511
Open Access | Times Cited: 172
Clustering predicted structures at the scale of the known protein universe
Inigo Barrio‐Hernandez, Jingi Yeo, Jürgen Jänes, et al.
Nature (2023) Vol. 622, Iss. 7983, pp. 637-645
Open Access | Times Cited: 170
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