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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Quantifying the effect of experimental perturbations at single-cell resolution
Daniel B. Burkhardt, Jay S. Stanley, Alexander Tong, et al.
Nature Biotechnology (2021) Vol. 39, Iss. 5, pp. 619-629
Open Access | Times Cited: 159

Showing 1-25 of 159 citing articles:

Best practices for single-cell analysis across modalities
Lukas Heumos, Anna C. Schaar, Christopher Lance, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 8, pp. 550-572
Open Access | Times Cited: 527
Differential abundance testing on single-cell data using k-nearest neighbor graphs
Emma Dann, Neil C. Henderson, Sarah A. Teichmann, et al.
Nature Biotechnology (2021) Vol. 40, Iss. 2, pp. 245-253
Open Access | Times Cited: 493
High-content CRISPR screening
Christoph Bock, Paul Datlinger, Florence M. Chardon, et al.
Nature Reviews Methods Primers (2022) Vol. 2, Iss. 1
Open Access | Times Cited: 375
Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium identifies target cells, alterations in gene expression, and cell state changes
Neal G. Ravindra, Mia Madel Alfajaro, Victor Gasque, et al.
PLoS Biology (2021) Vol. 19, Iss. 3, pp. e3001143-e3001143
Open Access | Times Cited: 247
High-content CRISPR screening
Christoph Bock, Paul Datlinger, Florence M. Chardon, et al.
Nature Reviews Methods Primers (2022) Vol. 2, Iss. 1
Open Access | Times Cited: 207
Graph representation learning in biomedicine and healthcare
Michelle M. Li, Kexin Huang, Marinka Žitnik
Nature Biomedical Engineering (2022) Vol. 6, Iss. 12, pp. 1353-1369
Open Access | Times Cited: 164
Single-cell eQTL models reveal dynamic T cell state dependence of disease loci
Aparna Nathan, Samira Asgari, Kazuyoshi Ishigaki, et al.
Nature (2022) Vol. 606, Iss. 7912, pp. 120-128
Open Access | Times Cited: 137
Detection of differentially abundant cell subpopulations in scRNA-seq data
Jun Zhao, Ariel Jaffe, Henry Li, et al.
Proceedings of the National Academy of Sciences (2021) Vol. 118, Iss. 22
Open Access | Times Cited: 119
Over 1000 tools reveal trends in the single-cell RNA-seq analysis landscape
Luke Zappia, Fabian J. Theis
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 119
Mother-to-infant microbiota transmission and infant microbiota development across multiple body sites
Debby Bogaert, Gina J van Beveren, Emma M. de Koff, et al.
Cell Host & Microbe (2023) Vol. 31, Iss. 3, pp. 447-460.e6
Open Access | Times Cited: 117
Single-cell genomics meets human genetics
Anna Cuomo, Aparna Nathan, Soumya Raychaudhuri, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 8, pp. 535-549
Closed Access | Times Cited: 73
scPerturb: harmonized single-cell perturbation data
Stefan Peidli, Tessa D. Green, Ciyue Shen, et al.
Nature Methods (2024) Vol. 21, Iss. 3, pp. 531-540
Open Access | Times Cited: 51
PD-1 maintains CD8 T cell tolerance towards cutaneous neoantigens
Martina Damo, Noah I. Hornick, Aarthi Venkat, et al.
Nature (2023) Vol. 619, Iss. 7968, pp. 151-159
Open Access | Times Cited: 43
TCR-independent CD137 (4-1BB) signaling promotes CD8+-exhausted T cell proliferation and terminal differentiation
Andrea Pichler, Nadège Carrié, Marine Cuisinier, et al.
Immunity (2023) Vol. 56, Iss. 7, pp. 1631-1648.e10
Open Access | Times Cited: 43
The future of rapid and automated single-cell data analysis using reference mapping
Mohammad Lotfollahi, Yuhan Hao, Fabian J. Theis, et al.
Cell (2024) Vol. 187, Iss. 10, pp. 2343-2358
Open Access | Times Cited: 27
Selective advantage of mutant stem cells in human clonal hematopoiesis is associated with attenuated response to inflammation and aging
Niels Asger Jakobsen, Sven Turkalj, Andy G.X. Zeng, et al.
Cell stem cell (2024) Vol. 31, Iss. 8, pp. 1127-1144.e17
Open Access | Times Cited: 24
CD200+ fibroblasts form a pro-resolving mesenchymal network in arthritis
Simon Rauber, Hashem Mohammadian, Christian Schmidkonz, et al.
Nature Immunology (2024) Vol. 25, Iss. 4, pp. 682-692
Open Access | Times Cited: 23
Toward a foundation model of causal cell and tissue biology with a Perturbation Cell and Tissue Atlas
Jennifer Rood, Anna Hupalowska, Aviv Regev
Cell (2024) Vol. 187, Iss. 17, pp. 4520-4545
Closed Access | Times Cited: 22
Endocrine-Exocrine Signaling Drives Obesity-Associated Pancreatic Ductal Adenocarcinoma
Katherine Chung, Jaffarguriqbal Singh, Lauren Lawres, et al.
Cell (2020) Vol. 181, Iss. 4, pp. 832-847.e18
Open Access | Times Cited: 110
From bench to bedside: Single-cell analysis for cancer immunotherapy
Emily F. Davis-Marcisak, Atul Deshpande, Genevieve Stein-O’Brien, et al.
Cancer Cell (2021) Vol. 39, Iss. 8, pp. 1062-1080
Open Access | Times Cited: 85
DeepVelo : Single-cell transcriptomic deep velocity field learning with neural ordinary differential equations
Zhanlin Chen, William C. King, Ahyeon Hwang, et al.
Science Advances (2022) Vol. 8, Iss. 48
Open Access | Times Cited: 59
Multiscale PHATE identifies multimodal signatures of COVID-19
Manik Kuchroo, Jessie Huang, Patrick Wong, et al.
Nature Biotechnology (2022) Vol. 40, Iss. 5, pp. 681-691
Open Access | Times Cited: 55
Interspecies commensal interactions have nonlinear impacts on host immunity
Tyler Rice, Agata A. Bielecka, Mytien Nguyen, et al.
Cell Host & Microbe (2022) Vol. 30, Iss. 7, pp. 988-1002.e6
Open Access | Times Cited: 45
Delineating mouse β-cell identity during lifetime and in diabetes with a single cell atlas
Karin Hrovatin, Aimée Bastidas-Ponce, Mostafa Bakhti, et al.
Nature Metabolism (2023) Vol. 5, Iss. 9, pp. 1615-1637
Open Access | Times Cited: 39
Single-cell analysis reveals inflammatory interactions driving macular degeneration
Manik Kuchroo, Marcello DiStasio, Eric Song, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 38
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