Open Access Helper

OpenAlex Citation Counts

OpenAlex Citations Logo

OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Robust integration of multiple single-cell RNA sequencing datasets using a single reference space
Yang Liu, Tao Wang, Bin Zhou, et al.
Nature Biotechnology (2021) Vol. 39, Iss. 7, pp. 877-884
Open Access | Times Cited: 40

Showing 1-25 of 40 citing articles:

Cardiac Pericytes Acquire a Fibrogenic Phenotype and Contribute to Vascular Maturation After Myocardial Infarction
Linda Alex, Izabela Tuleta, Silvia C. Hernández, et al.
Circulation (2023) Vol. 148, Iss. 11, pp. 882-898
Closed Access | Times Cited: 37
Benchmarking integration of single-cell differential expression
Nguyen Cao Truong Hai, Bukyung Baik, Sora Yoon, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 28
Single-cell transcriptomics uncovers a non-autonomous Tbx1-dependent genetic program controlling cardiac neural crest cell development
Christopher De Bono, Yang Liu, Alexander Ferrena, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 25
Semi-supervised integration of single-cell transcriptomics data
Massimo Andreatta, Léonard Hérault, Paul Gueguen, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 15
Integration mapping of cardiac fibroblast single-cell transcriptomes elucidates cellular principles of fibrosis in diverse pathologies
Ralph Patrick, Vaibhao Janbandhu, Vikram J. Tallapragada, et al.
Science Advances (2024) Vol. 10, Iss. 25
Open Access | Times Cited: 14
Macrophages in the infarcted heart acquire a fibrogenic phenotype, expressing matricellular proteins, but do not undergo fibroblast conversion
Ruoshui Li, Anis Hanna, Shuaibo Huang, et al.
Journal of Molecular and Cellular Cardiology (2024) Vol. 196, pp. 152-167
Closed Access | Times Cited: 9
Single cell multi-omic analysis identifies a Tbx1-dependent multilineage primed population in murine cardiopharyngeal mesoderm
Hiroko Nomaru, Yang Liu, Christopher De Bono, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 43
Temporal progress of gene expression analysis with RNA-Seq data: A review on the relationship between computational methods
Juliana Costa-Silva, Douglas Silva Domingues, David Menotti, et al.
Computational and Structural Biotechnology Journal (2022) Vol. 21, pp. 86-98
Open Access | Times Cited: 25
Protective effects of macrophage-specific integrin α5 in myocardial infarction are associated with accentuated angiogenesis
Ruoshui Li, Bijun Chen, Akihiko Kubota, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 16
Deep Batch Integration and Denoise of Single‐Cell RNA‐Seq Data
Qin Lu, Guangya Zhang, Shaoqiang Zhang, et al.
Advanced Science (2024) Vol. 11, Iss. 29
Open Access | Times Cited: 6
Benchmark of Data Processing Methods and Machine Learning Models for Gut Microbiome-Based Diagnosis of Inflammatory Bowel Disease
Ryszard Kubinski, Jean-Yves Djamen-Kepaou, Timur Zhanabaev, et al.
Frontiers in Genetics (2022) Vol. 13
Open Access | Times Cited: 22
Molecular and network disruptions in neurodevelopment uncovered by single cell transcriptomics analysis of CHD8 heterozygous cerebral organoids
Maider Astorkia, Yang Liu, Erika Pedrosa, et al.
Heliyon (2024) Vol. 10, Iss. 14, pp. e34862-e34862
Open Access | Times Cited: 4
Atlas of multilineage stem cell differentiation reveals TMEM88 as a developmental regulator of blood pressure
Sophie Shen, Tessa Werner, Samuel W. Lukowski, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Machine learning-based prediction reveals kinase MAP4K4 regulates neutrophil differentiation through phosphorylating apoptosis-related proteins
Guihua Wang, Dan Zhang, Zhifeng He, et al.
PLoS Computational Biology (2025) Vol. 21, Iss. 3, pp. e1012877-e1012877
Open Access
scRCA: A Siamese network-based pipeline for annotating cell types using noisy single-cell RNA-seq reference data
Yan Liu, Chen Li, Long-Chen Shen, et al.
Computers in Biology and Medicine (2025) Vol. 190, pp. 110068-110068
Closed Access
Hepatocyte Smoothened Activity Controls Susceptibility to Insulin Resistance and Nonalcoholic Fatty Liver Disease
Tianyi Chen, George D. Dalton, Seh‐Hoon Oh, et al.
Cellular and Molecular Gastroenterology and Hepatology (2022) Vol. 15, Iss. 4, pp. 949-970
Open Access | Times Cited: 16
SKP2 Knockout in Rb1/p53–Deficient Mouse Models of Osteosarcoma Induces Immune Infiltration and Drives a Transcriptional Program with a Favorable Prognosis
Alexander Ferrena, Jichuan Wang, Ranxin Zhang, et al.
Molecular Cancer Therapeutics (2023) Vol. 23, Iss. 2, pp. 223-234
Open Access | Times Cited: 8
Beaconet: A Reference‐Free Method for Integrating Multiple Batches of Single‐Cell Transcriptomic Data in Original Molecular Space
Xu Han, Yusen Ye, Ran Duan, et al.
Advanced Science (2024) Vol. 11, Iss. 26
Open Access | Times Cited: 2
Evaluating microglial phenotypes using single-cell technologies
Roman Sankowski, Gianni Monaco, Marco Prinz
Trends in Neurosciences (2021) Vol. 45, Iss. 2, pp. 133-144
Closed Access | Times Cited: 16
Domain adaptation for supervised integration of scRNA-seq data
Yutong Sun, Peng Qiu
Communications Biology (2023) Vol. 6, Iss. 1
Open Access | Times Cited: 5
Tbx2 and Tbx3 regulate cell fate progression of the otic vesicle for inner ear development
Hansoo Song, Bernice E. Morrow
Developmental Biology (2022) Vol. 494, pp. 71-84
Open Access | Times Cited: 7
Accurate integration of multiple heterogeneous single-cell RNA-seq data sets by learning contrastive biological variation
Yang Zhou, Qiongyu Sheng, Jing Qi, et al.
Genome Research (2023) Vol. 33, Iss. 5, pp. 750-762
Open Access | Times Cited: 4
Comprehensive integration of single-cell transcriptomic data illuminates the regulatory network architecture of plant cell fate specification
Shanni Cao, Xue Zhao, Zhuojin Li, et al.
Plant Diversity (2024) Vol. 46, Iss. 3, pp. 372-385
Open Access | Times Cited: 1
scRCA: a Siamese network-based pipeline for the annotation of cell types using imperfect single-cell RNA-seq reference data
Yan Liu, Chen Li, Long-Chen Shen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
scDAPP: a comprehensive single-cell transcriptomics analysis pipeline optimized for cross-group comparison
Alexander Ferrena, Xiang Yu Zheng, Kevyn Jackson, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Page 1 - Next Page

Scroll to top