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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Locus-specific expression of transposable elements in single cells with CELLO-seq
Rebecca V. Berrens, Andrian Yang, Christopher Laumer, et al.
Nature Biotechnology (2021) Vol. 40, Iss. 4, pp. 546-554
Open Access | Times Cited: 52

Showing 1-25 of 52 citing articles:

Taming transposable elements in vertebrates: from epigenetic silencing to domestication
Miguel Vasconcelos Almeida, Grégoire Vernaz, Audrey L. K. Putman, et al.
Trends in Genetics (2022) Vol. 38, Iss. 6, pp. 529-553
Closed Access | Times Cited: 100
Context-aware transcript quantification from long-read RNA-seq data with Bambu
Ying Chen, Andre Sim, Yuk Kei Wan, et al.
Nature Methods (2023) Vol. 20, Iss. 8, pp. 1187-1195
Open Access | Times Cited: 75
Activation of human endogenous retroviruses and its physiological consequences
Nicholas Dopkins, Douglas F. Nixon
Nature Reviews Molecular Cell Biology (2023) Vol. 25, Iss. 3, pp. 212-222
Closed Access | Times Cited: 57
Towards targeting transposable elements for cancer therapy
Yonghao Liang, Xuan Qu, Nakul M. Shah, et al.
Nature reviews. Cancer (2024) Vol. 24, Iss. 2, pp. 123-140
Closed Access | Times Cited: 24
LINE-1 retrotransposition and its deregulation in cancers: implications for therapeutic opportunities
Carlos Mendez‐Dorantes, Kathleen H. Burns
Genes & Development (2023) Vol. 37, Iss. 21-24, pp. 948-967
Open Access | Times Cited: 27
SoloTE for improved analysis of transposable elements in single-cell RNA-Seq data using locus-specific expression
Rocío Rodríguez-Quiroz, Braulio Valdebenito‐Maturana
Communications Biology (2022) Vol. 5, Iss. 1
Open Access | Times Cited: 34
Single-cell analysis of isoform switching and transposable element expression during preimplantation embryonic development
Chaoyang Wang, Zhuoxing Shi, Qingpei Huang, et al.
PLoS Biology (2024) Vol. 22, Iss. 2, pp. e3002505-e3002505
Open Access | Times Cited: 7
Jump-starting life: balancing transposable element co-option and genome integrity in the developing mammalian embryo
Marlies E. Oomen, Maria‐Elena Torres‐Padilla
EMBO Reports (2024) Vol. 25, Iss. 4, pp. 1721-1733
Open Access | Times Cited: 7
Regulation and function of transposable elements in cancer genomes
Michael Lee, Syed Farhan Ahmad, Jian Xu
Cellular and Molecular Life Sciences (2024) Vol. 81, Iss. 1
Open Access | Times Cited: 7
Single-cell and spatial transcriptomics: Bridging current technologies with long-read sequencing
Chengwei Ulrika Yuan, Fu Xiang Quah, Martin Hemberg
Molecular Aspects of Medicine (2024) Vol. 96, pp. 101255-101255
Closed Access | Times Cited: 6
LINE-1 retrotransposon expression in cancerous, epithelial and neuronal cells revealed by 5′ single-cell RNA-Seq
Wilson McKerrow, Larisa Kagermazova, Nicole Doudican, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. 5, pp. 2033-2045
Open Access | Times Cited: 15
Critically short telomeres derepress retrotransposons to promote genome instability in embryonic stem cells
Nannan Zhao, Guoxing Yin, Chun Liu, et al.
Cell Discovery (2023) Vol. 9, Iss. 1
Open Access | Times Cited: 14
A field guide to endogenous retrovirus regulatory networks
Nicholas Dopkins, Morgan M. O’Mara, Elsa Lawrence, et al.
Molecular Cell (2022) Vol. 82, Iss. 20, pp. 3763-3768
Open Access | Times Cited: 20
An integrated proteome and transcriptome of B cell maturation defines poised activation states of transitional and mature B cells
Fiamma Salerno, Andrew J.M. Howden, Louise S. Matheson, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 13
TDP-43 chronic deficiency leads to dysregulation of transposable elements and gene expression by affecting R-loop and 5hmC crosstalk
Yingzi Hou, Yangping Li, Jian‐Feng Xiang, et al.
Cell Reports (2024) Vol. 43, Iss. 1, pp. 113662-113662
Open Access | Times Cited: 4
Epigenetic therapy potentiates transposable element transcription to create tumor-enriched antigens in glioblastoma cells
H. Josh Jang, Nakul M. Shah, Ju Heon Maeng, et al.
Nature Genetics (2024) Vol. 56, Iss. 9, pp. 1903-1913
Closed Access | Times Cited: 4
Transposable elements in early human embryo development and embryo models
Jonathan DiRusso, Amander T. Clark
Current Opinion in Genetics & Development (2023) Vol. 81, pp. 102086-102086
Open Access | Times Cited: 10
An endogenous retroviral element co-opts an upstream regulatory sequence to achieve somatic expression and mobility
Natalia Rubanova, Darshika Singh, Louis Barolle, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Transposable elements as genome regulators in normal and malignant haematopoiesis
Dmitry Prokopov, Hale Tunbak, Eve Leddy, et al.
Blood Cancer Journal (2025) Vol. 15, Iss. 1
Open Access
The peptide woods are lovely, dark and deep: Hunting for novel cancer antigens
Daniel Oreper, Susan Klaeger, Suchit Jhunjhunwala, et al.
Seminars in Immunology (2023) Vol. 67, pp. 101758-101758
Closed Access | Times Cited: 8
Navigating the brain and aging: exploring the impact of transposable elements from health to disease
Anna Le Breton, Margarida P. Bettencourt, Anne-Valérie Gendrel
Frontiers in Cell and Developmental Biology (2024) Vol. 12
Open Access | Times Cited: 3
Long-read RNA sequencing: a transformative technology for exploring transcriptome complexity in human diseases
Isabelle Heifetz Ament, Nicole DeBruyne, Feng Wang, et al.
Molecular Therapy (2024) Vol. 33, Iss. 3, pp. 883-894
Open Access | Times Cited: 3
Using long-read CAGE sequencing to profile cryptic-promoter-derived transcripts and their contribution to the immunopeptidome
Ju Heon Maeng, H. Josh Jang, Alan Y. Du, et al.
Genome Research (2023) Vol. 33, Iss. 12, pp. 2143-2155
Open Access | Times Cited: 7
How human endogenous retroviruses interact with the microbiota in health and disease
Nicholas Dopkins, Morgan M. O’Mara, B. K. Singh, et al.
Trends in Microbiology (2022) Vol. 30, Iss. 9, pp. 812-815
Closed Access | Times Cited: 12
Context-Aware Transcript Quantification from Long Read RNA-Seq data with Bambu
Ying Chen, Andre Sim, Yuk Kei Wan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 10
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