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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Multiscale PHATE identifies multimodal signatures of COVID-19
Manik Kuchroo, Jessie Huang, Patrick Wong, et al.
Nature Biotechnology (2022) Vol. 40, Iss. 5, pp. 681-691
Open Access | Times Cited: 55

Showing 1-25 of 55 citing articles:

Multimodal biomedical AI
Julián Acosta, Guido J. Falcone, Pranav Rajpurkar, et al.
Nature Medicine (2022) Vol. 28, Iss. 9, pp. 1773-1784
Open Access | Times Cited: 587
Mother-to-infant microbiota transmission and infant microbiota development across multiple body sites
Debby Bogaert, Gina J van Beveren, Emma M. de Koff, et al.
Cell Host & Microbe (2023) Vol. 31, Iss. 3, pp. 447-460.e6
Open Access | Times Cited: 117
Starfysh integrates spatial transcriptomic and histologic data to reveal heterogeneous tumor–immune hubs
Siyu He, Yinuo Jin, Achille Nazaret, et al.
Nature Biotechnology (2024)
Open Access | Times Cited: 20
Mapping Phenotypic Plasticity upon the Cancer Cell State Landscape Using Manifold Learning
Daniel B. Burkhardt, Beatriz P. San Juan, John G. Lock, et al.
Cancer Discovery (2022) Vol. 12, Iss. 8, pp. 1847-1859
Open Access | Times Cited: 49
Domestic dog lineages reveal genetic drivers of behavioral diversification
Emily V. Dutrow, James A. Serpell, Elaine A. Ostrander
Cell (2022) Vol. 185, Iss. 25, pp. 4737-4755.e18
Open Access | Times Cited: 47
Innate and Adaptive Immunity during SARS-CoV-2 Infection: Biomolecular Cellular Markers and Mechanisms
Brent Brown, Vanshika Ojha, Ingo Fricke, et al.
Vaccines (2023) Vol. 11, Iss. 2, pp. 408-408
Open Access | Times Cited: 37
Multi-view manifold learning of human brain-state trajectories
Erica L. Busch, Jessie Huang, Andrew Benz, et al.
Nature Computational Science (2023) Vol. 3, Iss. 3, pp. 240-253
Open Access | Times Cited: 24
Benchmarking differential abundance methods for finding condition-specific prototypical cells in multi-sample single-cell datasets
Haidong Yi, Alec Plotkin, Natalie Stanley
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 9
Immune cells and their inflammatory mediators modify β cells and cause checkpoint inhibitor–induced diabetes
Ana Luisa Perdigoto, Songyan Deng, Katherine Du, et al.
JCI Insight (2022) Vol. 7, Iss. 17
Open Access | Times Cited: 30
Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)
Mehdi Joodaki, Mina Shaigan, Víctor Parra‐Tabla, et al.
Molecular Systems Biology (2023) Vol. 20, Iss. 2, pp. 57-74
Open Access | Times Cited: 18
A diminished immune response underlies age-related SARS-CoV-2 pathologies
Kohei Oishi, Shu Horiuchi, Justin J. Frere, et al.
Cell Reports (2022) Vol. 39, Iss. 13, pp. 111002-111002
Open Access | Times Cited: 26
CUTS: A Deep Learning and Topological Framework for Multigranular Unsupervised Medical Image Segmentation
Chen Liu, Matthew Amodio, Liangbo L. Shen, et al.
Lecture notes in computer science (2024), pp. 155-165
Closed Access | Times Cited: 6
Building and analyzing metacells in single-cell genomics data
Mariia Bilous, Léonard Hérault, Aurélie AG Gabriel, et al.
Molecular Systems Biology (2024) Vol. 20, Iss. 7, pp. 744-766
Open Access | Times Cited: 5
Multi-omic analysis of Huntington’s disease reveals a compensatory astrocyte state
Fahad Paryani, Ji‐Sun Kwon, Christopher Ng, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 5
Artificial intelligence in clinical multiparameter flow cytometry and mass cytometry–key tools and progress
Franklin Fuda, Mingyi Chen, Weina Chen, et al.
Seminars in Diagnostic Pathology (2023) Vol. 40, Iss. 2, pp. 120-128
Closed Access | Times Cited: 13
HSV-2 triggers upregulation of MALAT1 in CD4+ T cells and promotes HIV latency reversal
Carl A. Pierce, Lip Nam Loh, Holly R. Steach, et al.
Journal of Clinical Investigation (2023) Vol. 133, Iss. 11
Open Access | Times Cited: 13
Diffusive topology preserving manifold distances for single-cell data analysis
Jiangyong Wei, Bin Zhang, Qiuwang Wang, et al.
Proceedings of the National Academy of Sciences (2025) Vol. 122, Iss. 4
Closed Access
CellPhenoX: An eXplainable Cell-specific machine learning method to predict clinical Phenotypes using single-cell multi-omics
Jade Young, Jun Inamo, Zachary Caterer, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Biases in machine-learning models of human single-cell data
Theresa Willem, Vladimir A. Shitov, Malte D. Luecken, et al.
Nature Cell Biology (2025)
Closed Access
Heterogeneity in IgG‐CD16 signaling in infectious disease outcomes*
Joseph C. González, Saborni Chakraborty, Natalie K. Thulin, et al.
Immunological Reviews (2022) Vol. 309, Iss. 1, pp. 64-74
Open Access | Times Cited: 16
Dissecting CD8+ T cell pathology of severe SARS-CoV-2 infection by single-cell immunoprofiling
Felix Schreibing, Monica T. Hannani, Hyojin Kim, et al.
Frontiers in Immunology (2022) Vol. 13
Open Access | Times Cited: 15
linc-mipep and linc-wrb encode micropeptides that regulate chromatin accessibility in vertebrate-specific neural cells
Valerie A. Tornini, Liyun Miao, Ho‐Joon Lee, et al.
eLife (2023) Vol. 12
Open Access | Times Cited: 8
NK- and T-cell granzyme B and K expression correlates with age, CMV infection and influenza vaccine-induced antibody titres in older adults
Chris P. Verschoor, Émilie Picard, Melissa K. Andrew, et al.
Frontiers in Aging (2023) Vol. 3
Open Access | Times Cited: 6
Utilizing multimodal AI to improve genetic analyses of cardiovascular traits
Yuchen Zhou, Justin Cosentino, Taedong Yun, et al.
medRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Deep generative model deciphers derailed trajectories in acute myeloid leukemia
Achille Nazaret, Joy Linyue Fan, Vincent‐Philippe Lavallée, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 4
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