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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Protein structure prediction with in-cell photo-crosslinking mass spectrometry and deep learning
Kolja Stahl, Andrea Graziadei, Therese Dau, et al.
Nature Biotechnology (2023) Vol. 41, Iss. 12, pp. 1810-1819
Open Access | Times Cited: 90

Showing 1-25 of 90 citing articles:

Modeling conformational states of proteins with AlphaFold
Davide Sala, Felipe Engelberger, Hassane S. Mchaourab, et al.
Current Opinion in Structural Biology (2023) Vol. 81, pp. 102645-102645
Open Access | Times Cited: 109
Induced pluripotent stem cells (iPSCs): molecular mechanisms of induction and applications
Jonas Cerneckis, Hongxia Cai, Yanhong Shi
Signal Transduction and Targeted Therapy (2024) Vol. 9, Iss. 1
Open Access | Times Cited: 68
CombFold: predicting structures of large protein assemblies using a combinatorial assembly algorithm and AlphaFold2
Ben Shor, Dina Schneidman‐Duhovny
Nature Methods (2024) Vol. 21, Iss. 3, pp. 477-487
Open Access | Times Cited: 39
Modelling protein complexes with crosslinking mass spectrometry and deep learning
Kolja Stahl, Robert Warneke, Lorenz Demann, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 25
Understanding the cell: Future views of structural biology
Martin Beck, Roberto Covino, Inga Hänelt, et al.
Cell (2024) Vol. 187, Iss. 3, pp. 545-562
Open Access | Times Cited: 20
Approximating Projections of Conformational Boltzmann Distributions with AlphaFold2 Predictions: Opportunities and Limitations
Benjamin P. Brown, Richard A. Stein, Jens Meiler, et al.
Journal of Chemical Theory and Computation (2024) Vol. 20, Iss. 3, pp. 1434-1447
Open Access | Times Cited: 19
Mass-spectrometry-based proteomics: from single cells to clinical applications
Tiannan Guo, Judith A. Steen, Matthias Mann
Nature (2025) Vol. 638, Iss. 8052, pp. 901-911
Closed Access | Times Cited: 3
AlphaFold2 and Deep Learning for Elucidating Enzyme Conformational Flexibility and Its Application for Design
Guillem Casadevall, Cristina Duran, Sílvia Osuna
JACS Au (2023) Vol. 3, Iss. 6, pp. 1554-1562
Open Access | Times Cited: 32
New advances in cross-linking mass spectrometry toward structural systems biology
Clinton Yu, Lan Huang
Current Opinion in Chemical Biology (2023) Vol. 76, pp. 102357-102357
Open Access | Times Cited: 25
The impact of AI‐based modeling on the accuracy of protein assembly prediction: Insights from CASP15
Burcu Çelet Özden, Andriy Kryshtafovych, Ezgi Karaca
Proteins Structure Function and Bioinformatics (2023) Vol. 91, Iss. 12, pp. 1636-1657
Open Access | Times Cited: 25
Recent Advances in NMR Protein Structure Prediction with ROSETTA
Julia Koehler Leman, Georg Künze
International Journal of Molecular Sciences (2023) Vol. 24, Iss. 9, pp. 7835-7835
Open Access | Times Cited: 23
Modeling Flexible Protein Structure With AlphaFold2 and Crosslinking Mass Spectrometry
Karen Manalastas-Cantos, Kish R. Adoni, Matthias Pfeifer, et al.
Molecular & Cellular Proteomics (2024) Vol. 23, Iss. 3, pp. 100724-100724
Open Access | Times Cited: 14
Evolution of Pyrrolysyl-tRNA Synthetase: From Methanogenesis to Genetic Code Expansion
Nikolaj G. Koch, Nediljko Budiša
Chemical Reviews (2024) Vol. 124, Iss. 16, pp. 9580-9608
Open Access | Times Cited: 14
Deep learning for protein structure prediction and design—progress and applications
Jürgen Jänes, Pedro Beltrão
Molecular Systems Biology (2024) Vol. 20, Iss. 3, pp. 162-169
Open Access | Times Cited: 13
Overview of AlphaFold2 and breakthroughs in overcoming its limitations
Lei Wang, Zehua Wen, Shiwei Liu, et al.
Computers in Biology and Medicine (2024) Vol. 176, pp. 108620-108620
Closed Access | Times Cited: 13
De novo generation of SARS-CoV-2 antibody CDRH3 with a pre-trained generative large language model
Haohuai He, Bing He, Lei Guan, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 13
SolPredictor: Predicting Solubility with Residual Gated Graph Neural Network
Waqar Ahmad, Hilal Tayara, Hyun Joo Shim, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 2, pp. 715-715
Open Access | Times Cited: 11
Progress, Challenges and Opportunities of NMR and XL-MS for Cellular Structural Biology
Zeting Zhang, Qun Zhao, Zhou Gong, et al.
JACS Au (2024) Vol. 4, Iss. 2, pp. 369-383
Open Access | Times Cited: 9
ModelArchive: a deposition database for computational macromolecular structural models
Gerardo Tauriello, Andrew Waterhouse, Juergen Haas, et al.
Journal of Molecular Biology (2025), pp. 168996-168996
Closed Access | Times Cited: 1
Modelling protein complexes with crosslinking mass spectrometry and deep learning
Kolja Stahl, Lorenz Demann, Rica Bremenkamp, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 20
Representing structures of the multiple conformational states of proteins
Theresa A. Ramelot, Roberto Tejero, G.T. Montelione
Current Opinion in Structural Biology (2023) Vol. 83, pp. 102703-102703
Open Access | Times Cited: 18
Leveraging Cross-Linking Mass Spectrometry for Modeling Antibody–Antigen Complexes
Andrea Di Ianni, Alessio Di Ianni, Kyra J. Cowan, et al.
Journal of Proteome Research (2024) Vol. 23, Iss. 3, pp. 1049-1061
Closed Access | Times Cited: 7
AlphaFold3, a secret sauce for predicting mutational effects on protein-protein interactions
Wei Lu, Jixian Zhang, Jiahua Rao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 7
Recent advances in photoaffinity labeling strategies to capture Glycan–Protein interactions
Jonathan L. Babulic, Fabiola V. De León González, Chantelle J. Capicciotti
Current Opinion in Chemical Biology (2024) Vol. 80, pp. 102456-102456
Open Access | Times Cited: 6
Chemical cross-linking and mass spectrometry enabled systems-level structural biology
Luke Botticelli, Anna Bakhtina, Nathan K. Kaiser, et al.
Current Opinion in Structural Biology (2024) Vol. 87, pp. 102872-102872
Closed Access | Times Cited: 6
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