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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Phage-inclusive profiling of human gut microbiomes with Phanta
Yishay Pinto, Meenakshi Chakraborty, Navami Jain, et al.
Nature Biotechnology (2023) Vol. 42, Iss. 4, pp. 651-662
Closed Access | Times Cited: 28

Showing 1-25 of 28 citing articles:

Antimicrobial resistance crisis: could artificial intelligence be the solution?
Guangyu Liu, Dan Yu, Mei-Mei Fan, et al.
Military Medical Research (2024) Vol. 11, Iss. 1
Open Access | Times Cited: 40
Single-cell multi-ome and immune profiles of the Inspiration4 crew reveal conserved, cell-type, and sex-specific responses to spaceflight
JangKeun Kim, Braden Tierney, Eliah Overbey, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 28
Longitudinal multi-omics analysis of host microbiome architecture and immune responses during short-term spaceflight
Braden Tierney, JangKeun Kim, Eliah Overbey, et al.
Nature Microbiology (2024) Vol. 9, Iss. 7, pp. 1661-1675
Open Access | Times Cited: 22
Sequencing-based analysis of microbiomes
Yishay Pinto, Ami S. Bhatt
Nature Reviews Genetics (2024) Vol. 25, Iss. 12, pp. 829-845
Closed Access | Times Cited: 22
Viroid-like colonists of human microbiomes
Ivan N. Zheludev, R. C. Edgar, María José López-Galiano, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 18
Longitudinal phage–bacteria dynamics in the early life gut microbiome
Michael J. Tisza, Richard E. Lloyd, Kristi L. Hoffman, et al.
Nature Microbiology (2025)
Open Access | Times Cited: 3
Expanding the human gut microbiome atlas of Africa
Dylan G. Maghini, Ovokeraye H. Oduaran, Luicer A. Ingasia, et al.
Nature (2025)
Open Access | Times Cited: 2
Analysis and culturing of the prototypic crAssphage reveals a phage-plasmid lifestyle
Danica T. Schmidtke, Angela Shang-Mei Hickey, Ivan Liachko, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 14
Viroid-like colonists of human microbiomes
Ivan N. Zheludev, R. C. Edgar, María José López-Galiano, et al.
Cell (2024) Vol. 187, Iss. 23, pp. 6521-6536.e18
Open Access | Times Cited: 14
Competition for shared resources increases dependence on initial population size during coalescence of gut microbial communities
D.A. Goldman, Katherine S. Xue, Autumn B. Parrott, et al.
Proceedings of the National Academy of Sciences (2025) Vol. 122, Iss. 11
Open Access | Times Cited: 1
VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models
Guillermo Rangel-Piñeros, Alexandre Almeida, Martín Beracochea, et al.
PLoS Computational Biology (2023) Vol. 19, Iss. 8, pp. e1011422-e1011422
Open Access | Times Cited: 19
Infant gut DNA bacteriophage strain persistence during the first 3 years of life
Yue Clare Lou, LinXing Chen, Adair L. Borges, et al.
Cell Host & Microbe (2023) Vol. 32, Iss. 1, pp. 35-47.e6
Open Access | Times Cited: 18
Engineering Phages to Fight Multidrug-Resistant Bacteria
Huan Peng, Irene A. Chen, Udi Qimron
Chemical Reviews (2024)
Open Access | Times Cited: 8
Role of vertical and horizontal microbial transmission of antimicrobial resistance genes in early life: insights from maternal-infant dyads
Manuel Bernabeu, Elena Cabello-Yeves, Eduard Flores Ventura, et al.
Current Opinion in Microbiology (2024) Vol. 77, pp. 102424-102424
Open Access | Times Cited: 6
Beyond bacteria: Phanta adds flavour to microbiome profiling with a focus on phages
Yishay Pinto
Nature reviews. Immunology (2025)
Closed Access
Characterization of the phyllosphere virome of fresh vegetables and potential transfer to the human gut
Ji-Woo Park, Yeo-Eun Yun, Jin Ah Cho, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Neglected role of virus-host interactions driving antibiotic resistance genes reduction in an urban river receiving treated wastewater
Xiaojie Yan, Yuan Xin, Liying Zhu, et al.
Water Research (2025), pp. 123627-123627
Closed Access
Abundance measurements reveal the balance between lysis and lysogeny in the human gut microbiome
Jamie Lopez Bernal, Saria McKeithen-Mead, Handuo Shi, et al.
Current Biology (2025)
Closed Access
Metagenomic investigation of viruses in green sea turtles (Chelonia mydas)
Hongwei Li, Yuan Chen, Zhongrong Xia, et al.
Frontiers in Microbiology (2025) Vol. 16
Open Access
Lytic and temperate phage naturally coexist in a dynamic population model
Ofer Kimchi, Yigal Meir, Ned S. Wingreen
The ISME Journal (2024) Vol. 18, Iss. 1
Open Access | Times Cited: 3
Expanding the human gut microbiome atlas of Africa
Dylan G. Maghini, Ovokeraye H. Oduaran, Jakob Wirbel, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
A metagenome-assembled genome inventory for children reveals early-life gut bacteriome and virome dynamics
Ye Peng, Zhu Jie, Shilan Wang, et al.
Cell Host & Microbe (2024)
Closed Access | Times Cited: 2
CHAMP delivers accurate taxonomic profiles of the prokaryotes, eukaryotes, and bacteriophages in the human microbiome
Sara Pita, Pernille Neve Myers, Joachim Johansen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
CHAMP delivers accurate taxonomic profiles of the prokaryotes, eukaryotes, and bacteriophages in the human microbiome
Sara Pita, Pernille Neve Myers, Joachim Johansen, et al.
Frontiers in Microbiology (2024) Vol. 15
Open Access | Times Cited: 1
Viral activation and ecological restructuring characterize a microbiome axis of spaceflight-associated immune activation
Christopher E. Mason, Braden Tierney, JangKeun Kim, et al.
Research Square (Research Square) (2023)
Open Access | Times Cited: 2
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