OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Single-cell DNA replication profiling identifies spatiotemporal developmental dynamics of chromosome organization
Hisashi Miura, Saori Takahashi, Rawin Poonperm, et al.
Nature Genetics (2019) Vol. 51, Iss. 9, pp. 1356-1368
Closed Access | Times Cited: 84

Showing 1-25 of 84 citing articles:

KMT2C/KMT2D-dependent H3K4me1 mediates changes in DNA replication timing and origin activity during a cell fate transition
Deniz Gökbuget, Liana Goehring, Ryan M. Boileau, et al.
Cell Reports (2025) Vol. 44, Iss. 2, pp. 115272-115272
Open Access | Times Cited: 2

Somatic mutation distributions in cancer genomes vary with three-dimensional chromatin structure
Kadir C. Akdemir, Victoria T. Le, Justin M. Kim, et al.
Nature Genetics (2020) Vol. 52, Iss. 11, pp. 1178-1188
Open Access | Times Cited: 105

Single-cell measurement of higher-order 3D genome organization with scSPRITE
Mary V. Arrastia, Joanna W. Jachowicz, Noah Ollikainen, et al.
Nature Biotechnology (2021) Vol. 40, Iss. 1, pp. 64-73
Open Access | Times Cited: 97

Nuclear Compartments: An Incomplete Primer to Nuclear Compartments, Bodies, and Genome Organization Relative to Nuclear Architecture
Andrew S. Belmont
Cold Spring Harbor Perspectives in Biology (2021) Vol. 14, Iss. 7, pp. a041268-a041268
Open Access | Times Cited: 87

Generation of dynamic three-dimensional genome structure through phase separation of chromatin
Shin Fujishiro, Masaki Sasai
Proceedings of the National Academy of Sciences (2022) Vol. 119, Iss. 22
Open Access | Times Cited: 58

dcHiC detects differential compartments across multiple Hi-C datasets
Abhijit Chakraborty, Jeffrey Wang, Ferhat Ay
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 45

Emergence of replication timing during early mammalian development
Tsunetoshi Nakatani, Tamás Schauer, Luis Altamirano‐Pacheco, et al.
Nature (2023) Vol. 625, Iss. 7994, pp. 401-409
Open Access | Times Cited: 29

Chromosome compartmentalization: causes, changes, consequences, and conundrums
Heng Li, Christopher Playter, Priyojit Das, et al.
Trends in Cell Biology (2024) Vol. 34, Iss. 9, pp. 707-727
Closed Access | Times Cited: 13

Cell-type differential targeting of SETDB1 prevents aberrant CTCF binding, chromatin looping, and cis-regulatory interactions
Phoebe Lut Fei Tam, Ming Fung Cheung, Lu Yan Chan, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 11

Embryonic genome instability upon DNA replication timing program emergence
Saori Takahashi, Hirohisa Kyogoku, Takuya Hayakawa, et al.
Nature (2024) Vol. 633, Iss. 8030, pp. 686-694
Open Access | Times Cited: 10

Mammalian DNA Replication Timing
Athanasios E Vouzas, David M. Gilbert
Cold Spring Harbor Perspectives in Biology (2021), pp. a040162-a040162
Open Access | Times Cited: 54

DNA methylation is required to maintain both DNA replication timing precision and 3D genome organization integrity
Qian Du, Grady C. Smith, Phuc‐Loi Luu, et al.
Cell Reports (2021) Vol. 36, Iss. 12, pp. 109722-109722
Open Access | Times Cited: 52

Replication timing and transcriptional control: beyond cause and effect — part IV
Athanasios E Vouzas, David M. Gilbert
Current Opinion in Genetics & Development (2023) Vol. 79, pp. 102031-102031
Open Access | Times Cited: 18

Epigenetic plasticity safeguards heterochromatin configuration in mammals
Kei Fukuda, Takeshi Shimi, Chikako Shimura, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. 12, pp. 6190-6207
Open Access | Times Cited: 17

The nuclear periphery is a scaffold for tissue-specific enhancers
Cheryl L. Smith, Andrey Poleshko, Jonathan A. Epstein
Nucleic Acids Research (2021) Vol. 49, Iss. 11, pp. 6181-6195
Open Access | Times Cited: 37

Spatial orchestration of the genome: topological reorganisation during X-chromosome inactivation
Alexandra Martitz, Edda G. Schulz
Current Opinion in Genetics & Development (2024) Vol. 86, pp. 102198-102198
Open Access | Times Cited: 5

Genomic methods for measuring DNA replication dynamics
Michelle L. Hulke, Dashiell J. Massey, Amnon Koren
Chromosome Research (2019) Vol. 28, Iss. 1, pp. 49-67
Open Access | Times Cited: 42

Kronos scRT: a uniform framework for single-cell replication timing analysis
Stefano Gnan, Joseph M. Josephides, Xia Wu, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 20

Replication dynamics identifies the folding principles of the inactive X chromosome
Rawin Poonperm, Saya Ichihara, Hisashi Miura, et al.
Nature Structural & Molecular Biology (2023) Vol. 30, Iss. 8, pp. 1224-1237
Open Access | Times Cited: 11

Sex-specific DNA-replication in the early mammalian embryo
Jason A. Halliwell, Javier Martín‐González, Adnan Hashim, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 4

Chromatin-centric insights into DNA replication
Yang Liu, Zhengrong Zhangding, Xuhao Liu, et al.
Trends in Genetics (2025)
Closed Access

A tale of two strands: Decoding chromatin replication through strand-specific sequencing
Zhiming Li, Zhiguo Zhang
Molecular Cell (2025) Vol. 85, Iss. 2, pp. 238-261
Closed Access

H3K27me3 and the PRC1-H2AK119ub pathway cooperatively maintain heterochromatin and transcriptional silencing after the loss of H3K9 methylation
Kei Fukuda, Chikako Shimura, Yoichi Shinkai
Research Square (Research Square) (2025)
Closed Access

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