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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Species-level functional profiling of metagenomes and metatranscriptomes
Eric A. Franzosa, Lauren J. McIver, Ali Rahnavard, et al.
Nature Methods (2018) Vol. 15, Iss. 11, pp. 962-968
Open Access | Times Cited: 1359

Showing 1-25 of 1359 citing articles:

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Evan Bolyen, Jai Ram Rideout, Matthew R. Dillon, et al.
Nature Biotechnology (2019) Vol. 37, Iss. 8, pp. 852-857
Open Access | Times Cited: 16998
PICRUSt2 for prediction of metagenome functions
Gavin M. Douglas, Vincent J. Maffei, Jesse Zaneveld, et al.
Nature Biotechnology (2020) Vol. 38, Iss. 6, pp. 685-688
Open Access | Times Cited: 4222
Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
Jason Lloyd‐Price, Cesar Arze, Ashwin N. Ananthakrishnan, et al.
Nature (2019) Vol. 569, Iss. 7758, pp. 655-662
Open Access | Times Cited: 2243
Gut microbiome structure and metabolic activity in inflammatory bowel disease
Eric A. Franzosa, Alexandra Sirota‐Madi, Julián Ávila-Pacheco, et al.
Nature Microbiology (2018) Vol. 4, Iss. 2, pp. 293-305
Open Access | Times Cited: 1494
Multivariable association discovery in population-scale meta-omics studies
Himel Mallick, Ali Rahnavard, Lauren J. McIver, et al.
PLoS Computational Biology (2021) Vol. 17, Iss. 11, pp. e1009442-e1009442
Open Access | Times Cited: 1421
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
Francesco Beghini, Lauren J. McIver, Aitor Blanco‐Míguez, et al.
eLife (2021) Vol. 10
Open Access | Times Cited: 1417
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
Edoardo Pasolli, Francesco Asnicar, Serena Manara, et al.
Cell (2019) Vol. 176, Iss. 3, pp. 649-662.e20
Open Access | Times Cited: 1355
Causal relationships among the gut microbiome, short-chain fatty acids and metabolic diseases
Serena Sanna, Natalie R. van Zuydam, Anubha Mahajan, et al.
Nature Genetics (2019) Vol. 51, Iss. 4, pp. 600-605
Open Access | Times Cited: 1208
Fecal microbiota transplant promotes response in immunotherapy-refractory melanoma patients
Erez N. Baruch, Ilan Youngster, Guy Ben‐Betzalel, et al.
Science (2020) Vol. 371, Iss. 6529, pp. 602-609
Closed Access | Times Cited: 1148
The Integrative Human Microbiome Project
Lita M. Proctor, Heather H. Creasy, Jennifer M. Fettweis, et al.
Nature (2019) Vol. 569, Iss. 7758, pp. 641-648
Open Access | Times Cited: 1113
Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice
Gil Sharon, Nikki Jamie Cruz, Dae‐Wook Kang, et al.
Cell (2019) Vol. 177, Iss. 6, pp. 1600-1618.e17
Open Access | Times Cited: 917
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
Andrew Maltez Thomas, Paolo Manghi, Francesco Asnicar, et al.
Nature Medicine (2019) Vol. 25, Iss. 4, pp. 667-678
Open Access | Times Cited: 753
Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals
Francesco Asnicar, Sarah Berry, Ana M. Valdes, et al.
Nature Medicine (2021) Vol. 27, Iss. 2, pp. 321-332
Open Access | Times Cited: 693
A practical guide to amplicon and metagenomic analysis of microbiome data
Yongxin Liu, Yuan Qin, Tong Chen, et al.
Protein & Cell (2020) Vol. 12, Iss. 5, pp. 315-330
Open Access | Times Cited: 625
Interplay between the human gut microbiome and host metabolism
Alessia Visconti, Caroline I. Le Roy, Fabio Rosa, et al.
Nature Communications (2019) Vol. 10, Iss. 1
Open Access | Times Cited: 603
MicroRNAs and complex diseases: from experimental results to computational models
Xing Chen, Di Xie, Qi Zhao, et al.
Briefings in Bioinformatics (2017) Vol. 20, Iss. 2, pp. 515-539
Closed Access | Times Cited: 587
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
Aitor Blanco‐Míguez, Francesco Beghini, Fabio Cumbo, et al.
Nature Biotechnology (2023) Vol. 41, Iss. 11, pp. 1633-1644
Open Access | Times Cited: 568
Bifidobacteria-mediated immune system imprinting early in life
Bethany M. Henrick, Lucie Rodriguez, Tadepally Lakshmikanth, et al.
Cell (2021) Vol. 184, Iss. 15, pp. 3884-3898.e11
Open Access | Times Cited: 521
Environmental factors shaping the gut microbiome in a Dutch population
Ranko Gaćeša, Alexander Kurilshikov, Arnau Vich Vila, et al.
Nature (2022) Vol. 604, Iss. 7907, pp. 732-739
Closed Access | Times Cited: 477
Gut microbiota composition and functional changes in inflammatory bowel disease and irritable bowel syndrome
Arnau Vich Vila, Floris Imhann, Valerie Collij, et al.
Science Translational Medicine (2018) Vol. 10, Iss. 472
Open Access | Times Cited: 471
Depicting SARS-CoV-2 faecal viral activity in association with gut microbiota composition in patients with COVID-19
Tao Zuo, Qin Liu, Fen Zhang, et al.
Gut (2020), pp. gutjnl-322294
Open Access | Times Cited: 451
The gut microbiota is associated with immune cell dynamics in humans
Jonas Schlüter, Jonathan U. Peled, Bradford P. Taylor, et al.
Nature (2020) Vol. 588, Iss. 7837, pp. 303-307
Open Access | Times Cited: 420
Obese Individuals with and without Type 2 Diabetes Show Different Gut Microbial Functional Capacity and Composition
Louise B. Thingholm, Malte Rühlemann, Manja Koch, et al.
Cell Host & Microbe (2019) Vol. 26, Iss. 2, pp. 252-264.e10
Open Access | Times Cited: 376
PICRUSt2: An improved and customizable approach for metagenome inference
Gavin M. Douglas, Vincent J. Maffei, Jesse Zaneveld, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2019)
Open Access | Times Cited: 370
Human gut bacteria produce ΤΗ17-modulating bile acid metabolites
Donggi Paik, Lina Yao, Yancong Zhang, et al.
Nature (2022) Vol. 603, Iss. 7903, pp. 907-912
Open Access | Times Cited: 366
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