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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Cell type-specific inference of differential expression in spatial transcriptomics
Dylan Cable, Evan Murray, Vignesh Shanmugam, et al.
Nature Methods (2022) Vol. 19, Iss. 9, pp. 1076-1087
Open Access | Times Cited: 92

Showing 1-25 of 92 citing articles:

Dissecting the treatment-naive ecosystem of human melanoma brain metastasis
Jana Biermann, Johannes C. Melms, Amit Dipak Amin, et al.
Cell (2022) Vol. 185, Iss. 14, pp. 2591-2608.e30
Open Access | Times Cited: 122
Spatial maps of T cell receptors and transcriptomes reveal distinct immune niches and interactions in the adaptive immune response
Sophia Liu, J. Bryan Iorgulescu, Shuqiang Li, et al.
Immunity (2022) Vol. 55, Iss. 10, pp. 1940-1952.e5
Open Access | Times Cited: 74
Single-cell genomics meets human genetics
Anna Cuomo, Aparna Nathan, Soumya Raychaudhuri, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 8, pp. 535-549
Closed Access | Times Cited: 72
Integrating spatial transcriptomics data across different conditions, technologies and developmental stages
Xiang Zhou, Kangning Dong, Shihua Zhang
Nature Computational Science (2023) Vol. 3, Iss. 10, pp. 894-906
Open Access | Times Cited: 54
Integrating spatial and single-cell transcriptomics data using deep generative models with SpatialScope
Xiaomeng Wan, Jiashun Xiao, Sindy Sing Ting Tam, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 54
Benchmarking spatial clustering methods with spatially resolved transcriptomics data
Zhiyuan Yuan, Fangyuan Zhao, Senlin Lin, et al.
Nature Methods (2024) Vol. 21, Iss. 4, pp. 712-722
Closed Access | Times Cited: 53
SCS: cell segmentation for high-resolution spatial transcriptomics
Hao Chen, Dongshunyi Li, Ziv Bar‐Joseph
Nature Methods (2023) Vol. 20, Iss. 8, pp. 1237-1243
Open Access | Times Cited: 43
Challenges and perspectives in computational deconvolution of genomics data
Lana X. Garmire, Yijun Li, Qianhui Huang, et al.
Nature Methods (2024) Vol. 21, Iss. 3, pp. 391-400
Open Access | Times Cited: 20
Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions
Kaishu Mason, Anuja Sathe, Paul R. Hess, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 17
Spatiotemporal modeling of molecular holograms
Xiaojie Qiu, Daniel Y. Zhu, Yifan Lu, et al.
Cell (2024)
Open Access | Times Cited: 16
Analysis of multi-condition single-cell data with latent embedding multivariate regression
Constantin Ahlmann-Eltze, Wolfgang Huber
Nature Genetics (2025)
Open Access | Times Cited: 2
A rare PRIMER cell state in plant immunity
Tatsuya Nobori, Alexander Monell, Travis Lee, et al.
Nature (2025)
Open Access | Times Cited: 2
Statistical identification of cell type-specific spatially variable genes in spatial transcriptomics
Lulu Shang, Peijun Wu, Xiang Zhou
Nature Communications (2025) Vol. 16, Iss. 1
Open Access | Times Cited: 2
Digital Histopathology by Infrared Spectroscopic Imaging
Rohit Bhargava
Annual Review of Analytical Chemistry (2023) Vol. 16, Iss. 1, pp. 205-230
Open Access | Times Cited: 35
Mapping the transcriptome: Realizing the full potential of spatial data analysis
Eleftherios Zormpas, Rachel Queen, Alexis Comber, et al.
Cell (2023) Vol. 186, Iss. 26, pp. 5677-5689
Open Access | Times Cited: 32
Spatial transcriptomics in development and disease
Ran Zhou, Gaoxia Yang, Yan Zhang, et al.
Molecular Biomedicine (2023) Vol. 4, Iss. 1
Open Access | Times Cited: 27
STAMarker: determining spatial domain-specific variable genes with saliency maps in deep learning
Chihao Zhang, Kangning Dong, Kazuyuki Aihara, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. 20, pp. e103-e103
Open Access | Times Cited: 25
Myeloid cell-derived creatine in the hypoxic niche promotes glioblastoma growth
Aida Rashidi, Leah K. Billingham, Andrew Zolp, et al.
Cell Metabolism (2023) Vol. 36, Iss. 1, pp. 62-77.e8
Closed Access | Times Cited: 25
Single-cell spatial transcriptomics reveals distinct patterns of dysregulation in non-neuronal and neuronal cells induced by the Trem2R47H Alzheimer’s risk gene mutation
Kevin G. Johnston, Bereket T Berackey, Kristine M. Tran, et al.
Molecular Psychiatry (2024)
Open Access | Times Cited: 9
Integrating Single-Cell and Spatial Transcriptomics to Uncover and Elucidate GP73-Mediated Pro-Angiogenic Regulatory Networks in Hepatocellular Carcinoma
Jiazhou Ye, Xing Gao, Xi huang, et al.
Research (2024) Vol. 7
Open Access | Times Cited: 8
Categorization of 34 computational methods to detect spatially variable genes from spatially resolved transcriptomics data
Guanao Yan, Shuo Harper Hua, Jingyi Jessica Li
Nature Communications (2025) Vol. 16, Iss. 1
Open Access | Times Cited: 1
Spateo: multidimensional spatiotemporal modeling of single-cell spatial transcriptomics
Xiaojie Qiu, Daniel Y. Zhu, Jiajun Yao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 31
Unravelling infiltrating T‐cell heterogeneity in kidney renal clear cell carcinoma: Integrative single‐cell and spatial transcriptomic profiling
Haiqing Chen, Haoyuan Zuo, Jinbang Huang, et al.
Journal of Cellular and Molecular Medicine (2024) Vol. 28, Iss. 12
Open Access | Times Cited: 8
Sensing and guiding cell-state transitions by using genetically encoded endoribonuclease-mediated microRNA sensors
Lei Wang, Wenlong Xu, Shun Zhang, et al.
Nature Biomedical Engineering (2024)
Closed Access | Times Cited: 7
CellNeighborEX: deciphering neighbor‐dependent gene expression from spatial transcriptomics data
Hyobin Kim, Amit Kumar, Cecilia Lövkvist, et al.
Molecular Systems Biology (2023) Vol. 19, Iss. 11
Open Access | Times Cited: 15
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