Open Access Helper

OpenAlex Citation Counts

OpenAlex Citations Logo

OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Jointly defining cell types from multiple single-cell datasets using LIGER
Jialin Liu, Chao Gao, Joshua Sodicoff, et al.
Nature Protocols (2020) Vol. 15, Iss. 11, pp. 3632-3662
Open Access | Times Cited: 144

Showing 1-25 of 144 citing articles:

Methods and applications for single-cell and spatial multi-omics
Katy Vandereyken, Alejandro Sifrim, Bernard Thienpont, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 8, pp. 494-515
Open Access | Times Cited: 620
Single-Cell Transcriptome Analysis in Plants: Advances and Challenges
Rahul Shaw, Xin Tian, Jian Xu
Molecular Plant (2020) Vol. 14, Iss. 1, pp. 115-126
Open Access | Times Cited: 199
Spatial and cell type transcriptional landscape of human cerebellar development
Kimberly A. Aldinger, Zachary Thomson, Ian G. Phelps, et al.
Nature Neuroscience (2021) Vol. 24, Iss. 8, pp. 1163-1175
Open Access | Times Cited: 158
Spatially resolved transcriptomics: a comprehensive review of their technological advances, applications, and challenges
Mengnan Cheng, Yujia Jiang, Jiangshan Xu, et al.
Journal of genetics and genomics/Journal of Genetics and Genomics (2023) Vol. 50, Iss. 9, pp. 625-640
Open Access | Times Cited: 75
Single-cell spatial metabolomics with cell-type specific protein profiling for tissue systems biology
Thomas Hu, Mayar Allam, Shuangyi Cai, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 60
Benchmarking strategies for cross-species integration of single-cell RNA sequencing data
Yuyao Song, Zhichao Miao, Alvis Brāzma, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 57
Single-nucleus multi-omic profiling of human placental syncytiotrophoblasts identifies cellular trajectories during pregnancy
Meijiao Wang, Yawei Liu, Run Sun, et al.
Nature Genetics (2024) Vol. 56, Iss. 2, pp. 294-305
Open Access | Times Cited: 30
The covariance environment defines cellular niches for spatial inference
Doron Haviv, Ján Remšík, Mohamed I. Gatie, et al.
Nature Biotechnology (2024)
Open Access | Times Cited: 23
AI-driven multi-omics integration for multi-scale predictive modeling of genotype-environment-phenotype relationships
You Wu, Lei Xie
Computational and Structural Biotechnology Journal (2025) Vol. 27, pp. 265-277
Open Access | Times Cited: 5
Evolutionary cell type mapping with single-cell genomics
Amos Tanay, Arnau Sebé-Pedrós
Trends in Genetics (2021) Vol. 37, Iss. 10, pp. 919-932
Open Access | Times Cited: 64
Deciphering spatial genomic heterogeneity at a single cell resolution in multiple myeloma
Maximilian Merz, Almuth Maria Anni Merz, Jie Wang, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 47
Bone marrow endosteal stem cells dictate active osteogenesis and aggressive tumorigenesis
Yuki Matsushita, Jialin Liu, Angel Ka Yan Chu, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 32
A Roadmap for the Human Gut Cell Atlas
Matthias Zilbauer, Kylie R. James, Mandeep Kaur, et al.
Nature Reviews Gastroenterology & Hepatology (2023) Vol. 20, Iss. 9, pp. 597-614
Open Access | Times Cited: 28
Benchmarking algorithms for joint integration of unpaired and paired single-cell RNA-seq and ATAC-seq data
Michelle Y. Y. Lee, Klaus H. Kaestner, Mingyao Li
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 25
scCross: a deep generative model for unifying single-cell multi-omics with seamless integration, cross-modal generation, and in silico exploration
Xiuhui Yang, Koren K. Mann, Hao Wu, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 14
Interneuron diversity in the human dorsal striatum
Leonardo D. Garma, Lisbeth Harder, Juan M. Barba-Reyes, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 11
scmFormer Integrates Large‐Scale Single‐Cell Proteomics and Transcriptomics Data by Multi‐Task Transformer
Jing Xu, De‐Shuang Huang, Xiujun Zhang
Advanced Science (2024) Vol. 11, Iss. 19
Open Access | Times Cited: 10
Gene networks and systems biology in Alzheimer's disease: Insights from multi‐omics approaches
Negin Rahimzadeh, Shushrruth Sai Srinivasan, Jing Zhang, et al.
Alzheimer s & Dementia (2024) Vol. 20, Iss. 5, pp. 3587-3605
Open Access | Times Cited: 10
Cross-disorder and disease-specific pathways in dementia revealed by single-cell genomics
Jessica E. Rexach, Yuyan Cheng, Lawrence Chen, et al.
Cell (2024)
Closed Access | Times Cited: 9
scPRINT: pre-training on 50 million cells allows robust gene network predictions
Jérémie Kalfon, Jules Samaran, Gabriel Peyré, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access | Times Cited: 1
Control of neurogenic competence in mammalian hypothalamic tanycytes
Sooyeon Yoo, Juhyun Kim, Pin Lyu, et al.
Science Advances (2021) Vol. 7, Iss. 22
Open Access | Times Cited: 54
Co-varying neighborhood analysis identifies cell populations associated with phenotypes of interest from single-cell transcriptomics
Yakir Reshef, Laurie Rumker, Joyce B. Kang, et al.
Nature Biotechnology (2021) Vol. 40, Iss. 3, pp. 355-363
Open Access | Times Cited: 54
Mammary cell gene expression atlas links epithelial cell remodeling events to breast carcinogenesis
Kohei Saeki, Gregory Chang, Noriko Kanaya, et al.
Communications Biology (2021) Vol. 4, Iss. 1
Open Access | Times Cited: 45
Application of non-negative matrix factorization in oncology: one approach for establishing precision medicine
Ryuji Hamamoto, Ken Takasawa, Hidenori Machino, et al.
Briefings in Bioinformatics (2022) Vol. 23, Iss. 4
Open Access | Times Cited: 29
Single-Cell Multiomics
Emily Flynn, Ana Almonte-Loya, Gabriela K. Fragiadakis
Annual Review of Biomedical Data Science (2023) Vol. 6, Iss. 1, pp. 313-337
Open Access | Times Cited: 20
Page 1 - Next Page

Scroll to top