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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Optimizing the Cell Painting assay for image-based profiling
Beth A. Cimini, Srinivas Niranj Chandrasekaran, Maria Kost‐Alimova, et al.
Nature Protocols (2023) Vol. 18, Iss. 7, pp. 1981-2013
Open Access | Times Cited: 81

Showing 1-25 of 81 citing articles:

Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations
Srinivas Niranj Chandrasekaran, Beth A. Cimini, Amy Goodale, et al.
Nature Methods (2024) Vol. 21, Iss. 6, pp. 1114-1121
Open Access | Times Cited: 55
Learning representations for image-based profiling of perturbations
Nikita Moshkov, Michael Bornholdt, Santiago Benoit, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 38
High-dimensional phenotyping to define the genetic basis of cellular morphology
Matthew Tegtmeyer, Jatin Arora, Samira Asgari, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 29
A genome-wide atlas of human cell morphology
Meraj Ramezani, Julia Bauman, Avtar Singh, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 26
Cell Painting Gallery: an open resource for image-based profiling
Erin Weisbart, Ankur Kumar, John Arévalo, et al.
Nature Methods (2024) Vol. 21, Iss. 10, pp. 1775-1777
Closed Access | Times Cited: 14
Evaluating batch correction methods for image-based cell profiling
John Arévalo, Ellen Su, Jessica Ewald, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 13
A Decade in a Systematic Review: The Evolution and Impact of Cell Painting
Srijit Seal, Maria‐Anna Trapotsi, Ola Spjuth, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 12
Novel high-content and open-source image analysis tools for profiling mitochondrial morphology in neurological cell models
Marcus Y. Chin, David Joy, Madhuja Samaddar, et al.
SLAS DISCOVERY (2025), pp. 100208-100208
Open Access | Times Cited: 1
Improving Spatial Transcriptomics with Membrane‐Based Boundary Definition and Enhanced Single‐Cell Resolution
Song Li, Liqun Wang, Zitian He, et al.
Small Methods (2025)
Open Access | Times Cited: 1
Single-cell RNA sequencing reveals sex differences in the subcellular composition and associated gene-regulatory network activity of human carotid plaques
Katyayani Sukhavasi, Giuseppe Mocci, Lijiang Ma, et al.
Nature Cardiovascular Research (2025)
Open Access | Times Cited: 1
Predicting the Mitochondrial Toxicity of Small Molecules: Insights from Mechanistic Assays and Cell Painting Data
Marina García de Lomana, Paula Andrea Marin Zapata, Floriane Montanari
Chemical Research in Toxicology (2023) Vol. 36, Iss. 7, pp. 1107-1120
Open Access | Times Cited: 21
Evolution and impact of high content imaging
Gregory P. Way, Heba Sailem, Steven Shave, et al.
SLAS DISCOVERY (2023) Vol. 28, Iss. 7, pp. 292-305
Open Access | Times Cited: 21
Evaluating batch correction methods for image-based cell profiling
John Arévalo, Ellen Su, Robert van Dijk, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 15
Using Transcriptomics and Cell Morphology Data in Drug Discovery: The Long Road to Practice
Lavinia-Lorena Pruteanu, Andreas Bender
ACS Medicinal Chemistry Letters (2023) Vol. 14, Iss. 4, pp. 386-395
Open Access | Times Cited: 14
Discovery of Molecular Glue Degraders via Isogenic Morphological Profiling
Amanda Hui Qi Ng, Fabian Offensperger, José A. Cisneros, et al.
ACS Chemical Biology (2023) Vol. 18, Iss. 12, pp. 2464-2473
Open Access | Times Cited: 14
Interpreting Image‐based Profiles using Similarity Clustering and Single‐Cell Visualization
Fernanda Garcia-Fóssa, Mário Costa Cruz, Marzieh Haghighi, et al.
Current Protocols (2023) Vol. 3, Iss. 3
Open Access | Times Cited: 13
Assessing the performance of the Cell Painting assay across different imaging systems
Callum Tromans‐Coia, Nasim Jamali, Hamdah Shafqat Abbasi, et al.
Cytometry Part A (2023) Vol. 103, Iss. 11, pp. 915-926
Open Access | Times Cited: 12
Cell painting unravels insecticidal modes of action on Spodoptera frugiperda insect cells
Franziska Annabelle Hecker, Bruno Leggio, Tim König, et al.
Pesticide Biochemistry and Physiology (2024) Vol. 203, pp. 105983-105983
Open Access | Times Cited: 4
Morphological profiling for drug discovery in the era of deep learning
Qiaosi Tang, Ranjala Ratnayake, Gustavo Seabra, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 4
Open Access | Times Cited: 4
Cell-vision fusion: A Swin transformer-based approach for predicting kinase inhibitor mechanism of action from Cell Painting data
William Dee, Inês Sequeira, Anna Lobley, et al.
iScience (2024) Vol. 27, Iss. 8, pp. 110511-110511
Open Access | Times Cited: 4
Self‐Driving Microscopes: AI Meets Super‐Resolution Microscopy
Edward Ward, Anna Scheeder, Max Barysevich, et al.
Small Methods (2025)
Open Access
Unbiased identification of cell identity in dense mixed neural cultures
Sarah De Beuckeleer, Tim Van De Looverbosch, Johanna Van Den Daele, et al.
eLife (2025) Vol. 13
Open Access
Single-cell morphological tracking of cell states to identify small-molecule modulators of liver differentiation
Rebecca E. Graham, Runshi Zheng, Jesko Wagner, et al.
iScience (2025) Vol. 28, Iss. 2, pp. 111871-111871
Open Access
Generation of Cell-Painted Nuclei Structures from Brightfield Images Using Residual-WGAN Model
Abhinav Anthiyur Aravindan, Rohini Palanisamy
Lecture notes in electrical engineering (2025), pp. 25-34
Closed Access
BESTDR: Bayesian quantification of mechanism-specific drug response in cell culture
Thomas O. McDonald, Simone Bruno, James P. Roney, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
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