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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Large-scale differences in microbial biodiversity discovery between 16S amplicon and shotgun sequencing
Michael Tessler, Johannes S. Neumann, Ebrahim Afshinnekoo, et al.
Scientific Reports (2017) Vol. 7, Iss. 1
Open Access | Times Cited: 202

Showing 1-25 of 202 citing articles:

The Microbiota-Gut-Brain Axis
John F. Cryan, Kenneth J. O’Riordan, Caitlin S.M. Cowan, et al.
Physiological Reviews (2019) Vol. 99, Iss. 4, pp. 1877-2013
Open Access | Times Cited: 3485
Evaluating the Information Content of Shallow Shotgun Metagenomics
Benjamin Hillmann, Gabriel A. Al‐Ghalith, Robin Shields‐Cutler, et al.
mSystems (2018) Vol. 3, Iss. 6
Open Access | Times Cited: 396
Comparison between 16S rRNA and shotgun sequencing data for the taxonomic characterization of the gut microbiota
Francesco Durazzi, Claudia Sala, Gastone Castellani, et al.
Scientific Reports (2021) Vol. 11, Iss. 1
Open Access | Times Cited: 371
Comprehensive benchmarking and ensemble approaches for metagenomic classifiers
Alexa B. R. McIntyre, Rachid Ounit, Ebrahim Afshinnekoo, et al.
Genome biology (2017) Vol. 18, Iss. 1
Open Access | Times Cited: 298
Exploring the Human Microbiome: The Potential Future Role of Next-Generation Sequencing in Disease Diagnosis and Treatment
Muneer Ahmad Malla, Anamika Dubey, Ashwani Kumar, et al.
Frontiers in Immunology (2019) Vol. 9
Open Access | Times Cited: 296
How uterine microbiota might be responsible for a receptive, fertile endometrium
Marilen Benner, Gerben Ferwerda, Irma Joosten, et al.
Human Reproduction Update (2018) Vol. 24, Iss. 4, pp. 393-415
Open Access | Times Cited: 253
Interpretations of Environmental Microbial Community Studies Are Biased by the Selected 16S rRNA (Gene) Amplicon Sequencing Pipeline
Daniel Straub, Nia Blackwell, Adrián Langarica-Fuentes, et al.
Frontiers in Microbiology (2020) Vol. 11
Open Access | Times Cited: 229
A predictive index for health status using species-level gut microbiome profiling
Vinod K. Gupta, Minsuk Kim, Utpal Bakshi, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 227
The Role of Enterobacteriaceae in Gut Microbiota Dysbiosis in Inflammatory Bowel Diseases
Valerio Baldelli, Franco Scaldaferri, Lorenza Putignani, et al.
Microorganisms (2021) Vol. 9, Iss. 4, pp. 697-697
Open Access | Times Cited: 226
Storm impacts on phytoplankton community dynamics in lakes
Jason D. Stockwell, Jonathan P. Doubek, Rita Adrian, et al.
Global Change Biology (2020) Vol. 26, Iss. 5, pp. 2756-2784
Open Access | Times Cited: 224
Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics
Ling Xu, Zhaobin Dong, Dawn Chiniquy, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 176
Metabarcoding a diverse arthropod mock community
Thomas Braukmann, Natalya Ivanova, Sean W. J. Prosser, et al.
Molecular Ecology Resources (2019) Vol. 19, Iss. 3, pp. 711-727
Open Access | Times Cited: 173
Food allergy and the microbiome: Current understandings and future directions
Supinda Bunyavanich, M. Cecilia Berin
Journal of Allergy and Clinical Immunology (2019) Vol. 144, Iss. 6, pp. 1468-1477
Open Access | Times Cited: 164
Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data
Kyle D. Brumfield, Anwar Huq, Rita R. Colwell, et al.
PLoS ONE (2020) Vol. 15, Iss. 2, pp. e0228899-e0228899
Open Access | Times Cited: 147
Mining microbes for mental health: Determining the role of microbial metabolic pathways in human brain health and disease
Simon Spichak, Thomaz F. S. Bastiaanssen, Kirsten Berding, et al.
Neuroscience & Biobehavioral Reviews (2021) Vol. 125, pp. 698-761
Open Access | Times Cited: 109
Shotgun metagenomics and systemic targeted metabolomics highlight indole-3-propionic acid as a protective gut microbial metabolite against influenza infection
Séverine Heumel, Vinícius de Rezende Rodovalho, Charlotte Urien, et al.
Gut Microbes (2024) Vol. 16, Iss. 1
Open Access | Times Cited: 18
The gut microbiome in food allergy
William Zhao, Hsi-en Ho, Supinda Bunyavanich
Annals of Allergy Asthma & Immunology (2018) Vol. 122, Iss. 3, pp. 276-282
Open Access | Times Cited: 134
Multi-omics differentially classify disease state and treatment outcome in pediatric Crohn’s disease
Gavin M. Douglas, Richard Hansen, Casey Jones, et al.
Microbiome (2018) Vol. 6, Iss. 1
Open Access | Times Cited: 113
The bacterial community structure and functional profile in the heavy metal contaminated paddy soils, surrounding a nonferrous smelter in South Korea
Sherlyn Tipayno, Jaak Truu, Sandipan Samaddar, et al.
Ecology and Evolution (2018) Vol. 8, Iss. 12, pp. 6157-6168
Open Access | Times Cited: 109
Advances in monitoring soil microbial community dynamic and function
K. K. Nkongolo, Ramya Narendrula-Kotha
Journal of Applied Genetics (2020) Vol. 61, Iss. 2, pp. 249-263
Closed Access | Times Cited: 97
Cheesomics: the future pathway to understanding cheese flavour and quality
Roya Afshari, Christopher J. Pillidge, Daniel A. Dias, et al.
Critical Reviews in Food Science and Nutrition (2018) Vol. 60, Iss. 1, pp. 33-47
Closed Access | Times Cited: 96
Antimicrobial activity and carbohydrate metabolism in the bacterial metagenome of the soil-living invertebrate Folsomia candida
Valeria Agamennone, Ngoc Giang Le, Nico M. van Straalen, et al.
Scientific Reports (2019) Vol. 9, Iss. 1
Open Access | Times Cited: 94
Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe–microbe interaction networks in plant leaves
Julián Regalado, Derek S. Lundberg, Oliver Deusch, et al.
The ISME Journal (2020) Vol. 14, Iss. 8, pp. 2116-2130
Open Access | Times Cited: 91
Generating amplicon reads for microbial community assessment with next‐generation sequencing
Marcin Gołębiewski, Andrzej Tretyn
Journal of Applied Microbiology (2019) Vol. 128, Iss. 2, pp. 330-354
Open Access | Times Cited: 82
Comparison of the performance of ITS1 and ITS2 as barcodes in amplicon-based sequencing of bioaerosols
Hamza Mbareche, Marc Veillette, Guillaume J. Bilodeau, et al.
PeerJ (2020) Vol. 8, pp. e8523-e8523
Open Access | Times Cited: 80
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