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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Deciphering tissue structure and function using spatial transcriptomics
Benjamin L. Walker, Zixuan Cang, Honglei Ren, et al.
Communications Biology (2022) Vol. 5, Iss. 1
Open Access | Times Cited: 72

Showing 1-25 of 72 citing articles:

Identifying multicellular spatiotemporal organization of cells with SpaceFlow
Honglei Ren, Benjamin L. Walker, Zixuan Cang, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 101
SODB facilitates comprehensive exploration of spatial omics data
Zhiyuan Yuan, Wentao Pan, Xuan Zhao, et al.
Nature Methods (2023) Vol. 20, Iss. 3, pp. 387-399
Closed Access | Times Cited: 70
The diversification of methods for studying cell–cell interactions and communication
Erick Armingol, Hratch Baghdassarian, Nathan E. Lewis
Nature Reviews Genetics (2024) Vol. 25, Iss. 6, pp. 381-400
Closed Access | Times Cited: 52
SpatialDM for rapid identification of spatially co-expressed ligand–receptor and revealing cell–cell communication patterns
Zhuoxuan Li, Tianjie Wang, Pentao Liu, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 46
Spatial multi-omics: novel tools to study the complexity of cardiovascular diseases
Paul Kießling, Christoph Kuppe
Genome Medicine (2024) Vol. 16, Iss. 1
Open Access | Times Cited: 24
MENDER: fast and scalable tissue structure identification in spatial omics data
Zhiyuan Yuan
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 21
A computational pipeline for spatial mechano-transcriptomics
Adrien Hallou, Ruiyang He, Benjamin D. Simons, et al.
Nature Methods (2025)
Open Access | Times Cited: 2
The promising application of cell-cell interaction analysis in cancer from single-cell and spatial transcriptomics
Xinyi Wang, Axel A. Almet, Qing Nie
Seminars in Cancer Biology (2023) Vol. 95, pp. 42-51
Open Access | Times Cited: 34
Spatial transcriptomics drives a new era in plant research
Ruilian Yin, Keke Xia, Xun Xu
The Plant Journal (2023) Vol. 116, Iss. 6, pp. 1571-1581
Open Access | Times Cited: 31
SONAR enables cell type deconvolution with spatially weighted Poisson-Gamma model for spatial transcriptomics
Zhiyuan Liu, Dafei Wu, Weiwei Zhai, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 24
Navigating the landscapes of spatial transcriptomics: How computational methods guide the way
Runze Li, Xu Chen, Xuerui Yang
Wiley Interdisciplinary Reviews - RNA (2024) Vol. 15, Iss. 2
Closed Access | Times Cited: 8
Points to Consider From the ESTP Pathology 2.0 Working Group: Overview on Spatial Omics Technologies Supporting Drug Discovery and Development
Kerstin Hahn, Bettina Amberg, Josep M. Monné Rodríguez, et al.
Toxicologic Pathology (2025)
Closed Access | Times Cited: 1
3D multicellular systems in disease modelling: From organoids to organ-on-chip
Caoimhe Goldrick, Ina Guri, Gabriel Herrera-Oropeza, et al.
Frontiers in Cell and Developmental Biology (2023) Vol. 11
Open Access | Times Cited: 20
STEM enables mapping of single-cell and spatial transcriptomics data with transfer learning
Minsheng Hao, Erpai Luo, Yixin Chen, et al.
Communications Biology (2024) Vol. 7, Iss. 1
Open Access | Times Cited: 8
Unravelling infiltrating T‐cell heterogeneity in kidney renal clear cell carcinoma: Integrative single‐cell and spatial transcriptomic profiling
Haiqing Chen, Haoyuan Zuo, Jinbang Huang, et al.
Journal of Cellular and Molecular Medicine (2024) Vol. 28, Iss. 12
Open Access | Times Cited: 8
SPADE: spatial deconvolution for domain specific cell-type estimation
Yingying Lu, Qin M. Chen, Lingling An
Communications Biology (2024) Vol. 7, Iss. 1
Open Access | Times Cited: 6
METI: deep profiling of tumor ecosystems by integrating cell morphology and spatial transcriptomics
Jiahui Jiang, Yunhe Liu, Jiang‐Jiang Qin, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 6
Single-cell and spatial transcriptomics: Advances in heart development and disease applications
Xianglin Long, Xin Yuan, Jianlin Du
Computational and Structural Biotechnology Journal (2023) Vol. 21, pp. 2717-2731
Open Access | Times Cited: 14
Disparities in spatially variable gene calling highlight the need for benchmarking spatial transcriptomics methods
Natalie Charitakis, Agus Salim, Adam T. Piers, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 14
Applicability of Spatial Technology in Cancer Research
Sangjeong Ahn, Hye Seung Lee
Cancer Research and Treatment (2024) Vol. 56, Iss. 2, pp. 343-356
Open Access | Times Cited: 5
Pathogenesis, therapeutic strategies and biomarker development based on “omics” analysis related to microglia in Alzheimer’s disease
Chao Gao, Xin Shen, Yuyan Tan, et al.
Journal of Neuroinflammation (2022) Vol. 19, Iss. 1
Open Access | Times Cited: 22
spVC for the detection and interpretation of spatial gene expression variation
Shan Yu, Wei Vivian Li
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 4
A practical guide to spatial transcriptomics
Lukás Valihrach, Daniel Žucha, Pavel Abaffy, et al.
Molecular Aspects of Medicine (2024) Vol. 97, pp. 101276-101276
Closed Access | Times Cited: 4
Tissue module discovery in single-cell-resolution spatial transcriptomics data via cell-cell interaction-aware cell embedding
Yuzhe Li, Jinsong Zhang, Xin Gao, et al.
Cell Systems (2024) Vol. 15, Iss. 6, pp. 578-592.e7
Open Access | Times Cited: 4
PUFFFIN: an ultra-bright, customisable, single-plasmid system for labelling cell neighbourhoods
Tamina Lebek, Mattias Malaguti, Giulia L. M. Boezio, et al.
The EMBO Journal (2024) Vol. 43, Iss. 18, pp. 4110-4135
Open Access | Times Cited: 4
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