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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Accelerating minimap2 for long-read sequencing applications on modern CPUs
Saurabh Kalikar, Chirag Jain, Md Vasimuddin, et al.
Nature Computational Science (2022) Vol. 2, Iss. 2, pp. 78-83
Closed Access | Times Cited: 46

Showing 1-25 of 46 citing articles:

Plant pan-genomics and its applications
Junpeng Shi, Zhixi Tian, Jinsheng Lai, et al.
Molecular Plant (2022) Vol. 16, Iss. 1, pp. 168-186
Open Access | Times Cited: 69
A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats
Tristan V. de Jong, Yanchao Pan, Pasi Rastas, et al.
Cell Genomics (2024) Vol. 4, Iss. 4, pp. 100527-100527
Open Access | Times Cited: 11
From molecules to genomic variations: Accelerating genome analysis via intelligent algorithms and architectures
Mohammed Alser, Joël Lindegger, Can Fırtına, et al.
Computational and Structural Biotechnology Journal (2022) Vol. 20, pp. 4579-4599
Open Access | Times Cited: 37
Accelerating Minimap2 for Accurate Long Read Alignment on GPUs
Harisankar Sadasivan, Milos Maric, Eric T. Dawson, et al.
Journal of Biotechnology and Biomedicine (2023) Vol. 06, Iss. 01
Open Access | Times Cited: 20
A framework for high-throughput sequence alignment using real processing-in-memory systems
Safaa Diab, Amir Nassereldine, Mohammed Alser, et al.
Bioinformatics (2023) Vol. 39, Iss. 5
Open Access | Times Cited: 20
Machine learning and related approaches in transcriptomics
Yuning Cheng, Si-Mei Xu, Kristina Santucci, et al.
Biochemical and Biophysical Research Communications (2024) Vol. 724, pp. 150225-150225
Open Access | Times Cited: 6
Efficient mapping of accurate long reads in minimizer space with mapquik
Barış Ekim, Kristoffer Sahlin, Paul Medvedev, et al.
Genome Research (2023)
Open Access | Times Cited: 12
Taming large-scale genomic analyses via sparsified genomics
Mohammed Alser, Julien Eudine, Onur Mutlu
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
The gap‐free genome assembly and multi‐omics analyses illustrate the evolutionary history and the synthesis of medicinal components of Ligustrum lucidum
Yong Li, Meng‐Jie Yuan, Ziyan Zhang, et al.
The Plant Journal (2025) Vol. 121, Iss. 4
Closed Access
Chromatin context-dependent effects of epigenetic drugs on CRISPR-Cas9 editing
Ruben Schep, Max Trauernicht, Xabier Vergara, et al.
Nucleic Acids Research (2024) Vol. 52, Iss. 15, pp. 8815-8832
Open Access | Times Cited: 3
Proving sequence aligners can guarantee accuracy in almostO(mlogn) time through an average-case analysis of the seed-chain-extend heuristic
Jim Shaw, Yun William Yu
Genome Research (2023) Vol. 33, Iss. 7, pp. 1175-1187
Open Access | Times Cited: 9
MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data
Yuxuan Du, Fengzhu Sun
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 9
GenArchBench: A genomics benchmark suite for arm HPC processors
Lorién López‐Villellas, Rubén Langarita, Asaf Badouh, et al.
Future Generation Computer Systems (2024) Vol. 157, pp. 313-329
Open Access | Times Cited: 2
Breaking free from references: a consensus-based approach for community profiling with long amplicon nanopore data
Willem Stock, Coralie Rousseau, Glen Dierickx, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Accelerating Minimap2 for accurate long read alignment on GPUs
Harisankar Sadasivan, Milos Maric, Eric T. Dawson, et al.
Research Square (Research Square) (2022)
Open Access | Times Cited: 11
Algorithms for Colinear Chaining with Overlaps and Gap Costs
Chirag Jain, Daniel Gibney, Sharma V. Thankachan
Journal of Computational Biology (2022) Vol. 29, Iss. 11, pp. 1237-1251
Closed Access | Times Cited: 10
Cross Layer Design Using HW/SW Co-Design and HLS to Accelerate Chaining in Genomic Analysis
Kisaru Liyanage, Hasindu Gamaarachchi, Roshan Ragel, et al.
IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems (2023) Vol. 42, Iss. 9, pp. 2924-2937
Closed Access | Times Cited: 5
Porting and Optimizing BWA-MEM2 Using the Fujitsu A64FX Processor
Rubén Langarita, Adrià Armejach, Pablo Ibáñez, et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics (2023) Vol. 20, Iss. 5, pp. 3139-3153
Open Access | Times Cited: 5
Gapless provides combined scaffolding, gap filling, and assembly correction with long reads
Stephan Schmeing, Mark D. Robinson
Life Science Alliance (2023) Vol. 6, Iss. 7, pp. e202201471-e202201471
Open Access | Times Cited: 5
Efficient end-to-end long-read sequence mapping using minimap2-fpga integrated with hardware accelerated chaining
Kisaru Liyanage, Hiruna Samarakoon, Sri Parameswaran, et al.
Scientific Reports (2023) Vol. 13, Iss. 1
Open Access | Times Cited: 5
AGAThA: Fast and Efficient GPU Acceleration of Guided Sequence Alignment for Long Read Mapping
Seongyeon Park, Junguk Hong, Jaeyong Song, et al.
(2024), pp. 431-444
Open Access | Times Cited: 1
mm2-gb: GPU Accelerated Minimap2 for Long Read DNA Mapping
Juechu Dong, Xueshen Liu, Harisankar Sadasivan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Comparative Evolutionary Genomics in Insects
Barbara Feldmeyer, Erich Bornberg‐Bauer, Elias Dohmen, et al.
Methods in molecular biology (2024), pp. 473-514
Closed Access | Times Cited: 1
A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats
Tristan V. de Jong, Yanchao Pan, Pasi Rastas, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 3
Invited: Accelerating Genome Analysis via Algorithm-Architecture Co-Design
Onur Mutlu, Can Fırtına
(2023), pp. 1-4
Closed Access | Times Cited: 3
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