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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

QwikMD — Integrative Molecular Dynamics Toolkit for Novices and Experts
João V. Ribeiro, Rafael C. Bernardi, Till Rudack, et al.
Scientific Reports (2016) Vol. 6, Iss. 1
Open Access | Times Cited: 203

Showing 1-25 of 203 citing articles:

Scalable molecular dynamics on CPU and GPU architectures with NAMD
J. C. Phillips, David J. Hardy, Julio D. C. Maia, et al.
The Journal of Chemical Physics (2020) Vol. 153, Iss. 4
Open Access | Times Cited: 2393
In Situ Structure of Neuronal C9orf72 Poly-GA Aggregates Reveals Proteasome Recruitment
Qiang Guo, Carina Lehmer, Antonio Martínez-Sánchez, et al.
Cell (2018) Vol. 172, Iss. 4, pp. 696-705.e12
Open Access | Times Cited: 374
CHARMM-GUI supports the Amber force fields
Jumin Lee, Manuel Hitzenberger, Manuel Rieger, et al.
The Journal of Chemical Physics (2020) Vol. 153, Iss. 3
Open Access | Times Cited: 280
NAMD goes quantum: an integrative suite for hybrid simulations
Marcelo C. R. Melo, Rafael C. Bernardi, Till Rudack, et al.
Nature Methods (2018) Vol. 15, Iss. 5, pp. 351-354
Open Access | Times Cited: 208
Molecular mechanism of extreme mechanostability in a pathogen adhesin
Lukas F. Milles, Klaus Schulten, Hermann E. Gaub, et al.
Science (2018) Vol. 359, Iss. 6383, pp. 1527-1533
Open Access | Times Cited: 199
Structure of the human 26S proteasome at a resolution of 3.9 Å
A. Schweitzer, A. Aufderheide, Till Rudack, et al.
Proceedings of the National Academy of Sciences (2016) Vol. 113, Iss. 28, pp. 7816-7821
Open Access | Times Cited: 185
Structural insights into the functional cycle of the ATPase module of the 26S proteasome
Marc Wehmer, Till Rudack, Florian Beck, et al.
Proceedings of the National Academy of Sciences (2017) Vol. 114, Iss. 6, pp. 1305-1310
Open Access | Times Cited: 171
Structural insights into photosystem II assembly
Jure Zabret, Stefan Bohn, Sandra K. Schuller, et al.
Nature Plants (2021) Vol. 7, Iss. 4, pp. 524-538
Open Access | Times Cited: 138
GROMACS in the Cloud: A Global Supercomputer to Speed Up Alchemical Drug Design
Carsten Kutzner, Christian Kniep, Austin Cherian, et al.
Journal of Chemical Information and Modeling (2022) Vol. 62, Iss. 7, pp. 1691-1711
Open Access | Times Cited: 92
A State-of-the-Art Review on Machine Learning-Based Multiscale Modeling, Simulation, Homogenization and Design of Materials
Dana Bishara, Yuxi Xie, Wing Kam Liu, et al.
Archives of Computational Methods in Engineering (2022) Vol. 30, Iss. 1, pp. 191-222
Closed Access | Times Cited: 91
SARS-CoV-2 accessory proteins ORF7a and ORF3a use distinct mechanisms to down-regulate MHC-I surface expression
Najla Arshad, Maudry Laurent-Rolle, Wesam S. Ahmed, et al.
Proceedings of the National Academy of Sciences (2022) Vol. 120, Iss. 1
Open Access | Times Cited: 86
Visual dynamics: a WEB application for molecular dynamics simulation using GROMACS
Ivo Henrique Provensi Vieira, Eduardo Buganemi Botelho, Thales Junior de Souza Gomes, et al.
BMC Bioinformatics (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 48
Insights into the assembly and activation of the microtubule nucleator γ-TuRC
Peng Liu, Erik Župa, Annett Neuner, et al.
Nature (2019) Vol. 578, Iss. 7795, pp. 467-471
Closed Access | Times Cited: 138
PyContact: Rapid, Customizable, and Visual Analysis of Noncovalent Interactions in MD Simulations
Maximilian Scheurer, P. J. Rodenkirch, Marc Siggel, et al.
Biophysical Journal (2018) Vol. 114, Iss. 3, pp. 577-583
Open Access | Times Cited: 127
Generalized correlation-based dynamical network analysis: a new high-performance approach for identifying allosteric communications in molecular dynamics trajectories
Marcelo C. R. Melo, Rafael C. Bernardi, César de la Fuente‐Núñez, et al.
The Journal of Chemical Physics (2020) Vol. 153, Iss. 13
Open Access | Times Cited: 124
Expanded Coverage of the 26S Proteasome Conformational Landscape Reveals Mechanisms of Peptidase Gating
Markus R. Eisele, Randi G. Reed, Till Rudack, et al.
Cell Reports (2018) Vol. 24, Iss. 5, pp. 1301-1315.e5
Open Access | Times Cited: 120
TopoGromacs: Automated Topology Conversion from CHARMM to GROMACS within VMD
Josh V. Vermaas, David J. Hardy, John E. Stone, et al.
Journal of Chemical Information and Modeling (2016) Vol. 56, Iss. 6, pp. 1112-1116
Open Access | Times Cited: 95
Membrane proteins structures: A review on computational modeling tools
José Guilherme de Almeida, António J. Preto, Panagiotis I. Koukos, et al.
Biochimica et Biophysica Acta (BBA) - Biomembranes (2017) Vol. 1859, Iss. 10, pp. 2021-2039
Open Access | Times Cited: 95
Biomolecular modeling thrives in the age of technology
Tamar Schlick, Stephanie Portillo‐Ledesma
Nature Computational Science (2021) Vol. 1, Iss. 5, pp. 321-331
Open Access | Times Cited: 91
Streptavidin/biotin: Tethering geometry defines unbinding mechanics
Steffen M. Sedlak, Leonard C. Schendel, Hermann E. Gaub, et al.
Science Advances (2020) Vol. 6, Iss. 13
Open Access | Times Cited: 82
Mechanisms of Nanonewton Mechanostability in a Protein Complex Revealed by Molecular Dynamics Simulations and Single-Molecule Force Spectroscopy
Rafael C. Bernardi, Ellis Durner, Constantin Schoeler, et al.
Journal of the American Chemical Society (2019) Vol. 141, Iss. 37, pp. 14752-14763
Open Access | Times Cited: 78
Making it Rain: Cloud-Based Molecular Simulations for Everyone
Pablo R. Arantes, Marcelo D. Polêto, Conrado Pedebos, et al.
Journal of Chemical Information and Modeling (2021) Vol. 61, Iss. 10, pp. 4852-4856
Closed Access | Times Cited: 73
Ciprofloxacin and moxifloxacin could interact with SARS-CoV-2 protease: preliminary in silico analysis
Krzysztof Marciniec, Artur Beberok, Paweł Pęcak, et al.
Pharmacological Reports (2020) Vol. 72, Iss. 6, pp. 1553-1561
Open Access | Times Cited: 70
A tethered ligand assay to probe SARS-CoV-2:ACE2 interactions
Magnus S. Bauer, Sophia Gruber, Adina Hausch, et al.
Proceedings of the National Academy of Sciences (2022) Vol. 119, Iss. 14
Open Access | Times Cited: 51
Bacterial ribosome collision sensing by a MutS DNA repair ATPase paralogue
Federico Cerullo, Sebastian Filbeck, Pratik Rajendra Patil, et al.
Nature (2022) Vol. 603, Iss. 7901, pp. 509-514
Open Access | Times Cited: 49
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