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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Multiscale modeling of genome organization with maximum entropy optimization
Xingcheng Lin, Yifeng Qi, Andrew P. Latham, et al.
The Journal of Chemical Physics (2021) Vol. 155, Iss. 1
Open Access | Times Cited: 82

Showing 1-25 of 82 citing articles:

On the stability and layered organization of protein-DNA condensates
Andrew P. Latham, Bin Zhang
Biophysical Journal (2022) Vol. 121, Iss. 9, pp. 1727-1737
Open Access | Times Cited: 40
Compartmentalization with nuclear landmarks yields random, yet precise, genome organization
Kartik Kamat, Zhuohan Lao, Yifeng Qi, et al.
Biophysical Journal (2023) Vol. 122, Iss. 7, pp. 1376-1389
Open Access | Times Cited: 27
From Nucleosomes to Compartments: Physicochemical Interactions Underlying Chromatin Organization
Shuming Liu, Advait Athreya, Zhuohan Lao, et al.
Annual Review of Biophysics (2024) Vol. 53, Iss. 1, pp. 221-245
Open Access | Times Cited: 15
The Conformational Contribution to Molecular Complexity and Its Implications for Information Processing in Living Beings and Chemical Artificial Intelligence
Pier Luigi Gentili
Biomimetics (2024) Vol. 9, Iss. 2, pp. 121-121
Open Access | Times Cited: 15
Integrative spatiotemporal modeling of biomolecular processes: Application to the assembly of the nuclear pore complex
Andrew P. Latham, Wanlu Zhang, Jeremy O. B. Tempkin, et al.
Proceedings of the National Academy of Sciences (2025) Vol. 122, Iss. 11
Open Access | Times Cited: 1
Phase Separation and Correlated Motions in Motorized Genome
Zhongling Jiang, Yifeng Qi, Kartik Kamat, et al.
The Journal of Physical Chemistry B (2022) Vol. 126, Iss. 30, pp. 5619-5628
Open Access | Times Cited: 29
A maximum-entropy model to predict 3D structural ensembles of chromatin from pairwise distances with applications to interphase chromosomes and structural variants
Guang Shi, D. Thirumalai
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 17
Explicit ion modeling predicts physicochemical interactions for chromatin organization
Xingcheng Lin, Bin Zhang
eLife (2023) Vol. 12
Open Access | Times Cited: 16
Evaluating the role of the nuclear microenvironment in gene function by population-based modeling
Aslı Yıldırım, Nan Hua, Lorenzo Boninsegna, et al.
Nature Structural & Molecular Biology (2023) Vol. 30, Iss. 8, pp. 1193-1206
Open Access | Times Cited: 14
Author response: OpenNucleome for high resolution nuclear structural and dynamical modeling
Zhuohan Lao, Kartik Kamat, Zhongling Jiang, et al.
(2024)
Open Access | Times Cited: 5
A Liquid State Perspective on Dynamics of Chromatin Compartments
Rabia Laghmach, Michele Di Pierro, Davit A. Potoyan
Frontiers in Molecular Biosciences (2022) Vol. 8
Open Access | Times Cited: 22
Genome modeling: From chromatin fibers to genes
Stephanie Portillo‐Ledesma, Zilong Li, Tamar Schlick
Current Opinion in Structural Biology (2022) Vol. 78, pp. 102506-102506
Open Access | Times Cited: 21
Brownian dynamics simulations of mesoscale chromatin fibers
Zilong Li, Stephanie Portillo‐Ledesma, Tamar Schlick
Biophysical Journal (2022) Vol. 122, Iss. 14, pp. 2884-2897
Open Access | Times Cited: 20
Coarse-Grained Models to Study Protein–DNA Interactions and Liquid–Liquid Phase Separation
Utkarsh Kapoor, Young C. Kim, Jeetain Mittal
Journal of Chemical Theory and Computation (2023) Vol. 20, Iss. 4, pp. 1717-1731
Open Access | Times Cited: 12
Cluster size determines morphology of transcription factories in human cells
Massimiliano Semeraro, Giuseppe Negro, Giada Forte, et al.
(2025)
Open Access
Cluster size determines morphology of transcription factories in human cells
Massimiliano Semeraro, Giuseppe Negro, Giada Forte, et al.
(2025)
Open Access
CG modeling of nucleosome arrays reveals the salt-dependent chromatin fiber conformational variability
Tiedong Sun, Nikolay Korolev, Alexander P. Lyubartsev, et al.
The Journal of Chemical Physics (2025) Vol. 162, Iss. 2
Open Access
Interpretable Protein-DNA Interactions Captured by Structure-Sequence Optimization
Yafan Zhang, Irene Silvernail, Zhuyang Lin, et al.
(2025)
Open Access
Interpretable Protein-DNA Interactions Captured by Structure-Sequence Optimization
Yafan Zhang, Irene Silvernail, Zhuyang Lin, et al.
(2025)
Open Access
Connected Chromatin Amplifies Acetylation-Modulated Nucleosome Interactions
Ranran Li, Xingcheng Lin
Biochemistry (2025)
Closed Access
Information theoretic clustering of the human pangenome minigraph
Renato Ferrero, Filippo Gandino, A. Carbone
Pattern Recognition Letters (2025)
Open Access
Energy landscape analysis of the development of the chromosome structure across the cell cycle
Vinícius G. Contessoto, Antonio B. Oliveira, Sumitabha Brahmachari, et al.
Proceedings of the National Academy of Sciences (2025) Vol. 122, Iss. 12
Open Access
Tutorial on integrative spatiotemporal modeling by integrative modeling platform
Andrew P. Latham, Miha Rožič, Benjamin Webb, et al.
Protein Science (2025) Vol. 34, Iss. 4
Closed Access
Microphase separation produces interfacial environment within diblock biomolecular condensates
Andrew P. Latham, Longchen Zhu, Dina A. Sharon, et al.
eLife (2025) Vol. 12
Open Access
Chromatin structures from integrated AI and polymer physics model
E Schultz, Soren Kyhl, Rebecca Willett, et al.
PLoS Computational Biology (2025) Vol. 21, Iss. 4, pp. e1012912-e1012912
Open Access
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