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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Nucleosome allostery in pioneer transcription factor binding
Cheng Tan, Shoji Takada
Proceedings of the National Academy of Sciences (2020) Vol. 117, Iss. 34, pp. 20586-20596
Open Access | Times Cited: 83

Showing 1-25 of 83 citing articles:

Interfacial water confers transcription factors with dinucleotide specificity
Ekaterina Morgunova, Gábor Nagy, Yimeng Yin, et al.
Nature Structural & Molecular Biology (2025)
Open Access | Times Cited: 3
Multiscale modeling of genome organization with maximum entropy optimization
Xingcheng Lin, Yifeng Qi, Andrew P. Latham, et al.
The Journal of Chemical Physics (2021) Vol. 155, Iss. 1
Open Access | Times Cited: 82
Binding of regulatory proteins to nucleosomes is modulated by dynamic histone tails
Yunhui Peng, Shuxiang Li, Alexey V. Onufriev, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 82
Implementation of residue-level coarse-grained models in GENESIS for large-scale molecular dynamics simulations
Cheng Tan, Jaewoon Jung, Chigusa Kobayashi, et al.
PLoS Computational Biology (2022) Vol. 18, Iss. 4, pp. e1009578-e1009578
Open Access | Times Cited: 53
Pioneer factors: roles and their regulation in development
Amandine Barral, Kenneth S. Zaret
Trends in Genetics (2023) Vol. 40, Iss. 2, pp. 134-148
Open Access | Times Cited: 37
From Nucleosomes to Compartments: Physicochemical Interactions Underlying Chromatin Organization
Shuming Liu, Advait Athreya, Zhuohan Lao, et al.
Annual Review of Biophysics (2024) Vol. 53, Iss. 1, pp. 221-245
Open Access | Times Cited: 15
GENESIS CGDYN: large-scale coarse-grained MD simulation with dynamic load balancing for heterogeneous biomolecular systems
Jaewoon Jung, Cheng Tan, Yuji Sugita
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 15
Nucleosome-bound NR5A2 structure reveals pioneer factor mechanism by DNA minor groove anchor competition
Wataru Kobayashi, Anna H. Sappler, Daniel Bollschweiler, et al.
Nature Structural & Molecular Biology (2024) Vol. 31, Iss. 5, pp. 757-766
Open Access | Times Cited: 13
Epigenetic landscape of small cell lung cancer: small image of a giant recalcitrant disease
Parvez Κhan, Jawed A. Siddiqui, Shailendra Kumar Maurya, et al.
Seminars in Cancer Biology (2020) Vol. 83, pp. 57-76
Open Access | Times Cited: 51
Structures and consequences of pioneer factor binding to nucleosomes
Edgar Luzete-Monteiro, Kenneth S. Zaret
Current Opinion in Structural Biology (2022) Vol. 75, pp. 102425-102425
Open Access | Times Cited: 30
Structural mechanism of LIN28B nucleosome targeting by OCT4
R. Guan, Tengfei Lian, Bing‐Rui Zhou, et al.
Molecular Cell (2023) Vol. 83, Iss. 12, pp. 1970-1982.e6
Open Access | Times Cited: 21
Detection of new pioneer transcription factors as cell-type-specific nucleosome binders
Yunhui Peng, Wei Song, Vladimir B. Teif, et al.
eLife (2024) Vol. 12
Open Access | Times Cited: 7
OCT4 interprets and enhances nucleosome flexibility
Caitlin M. MacCarthy, Jan Huertas, Claudia Ortmeier, et al.
Nucleic Acids Research (2022) Vol. 50, Iss. 18, pp. 10311-10327
Open Access | Times Cited: 27
Chromatin fiber breaks into clutches under tension and crowding
Shuming Liu, Xingcheng Lin, Bin Zhang
Nucleic Acids Research (2022) Vol. 50, Iss. 17, pp. 9738-9747
Open Access | Times Cited: 24
Machines on Genes through the Computational Microscope
Souvik Sinha, Chinmai Pindi, Mohd Ahsan, et al.
Journal of Chemical Theory and Computation (2023) Vol. 19, Iss. 7, pp. 1945-1964
Open Access | Times Cited: 16
Structural dynamics in chromatin unraveling by pioneer transcription factors
A Orsetti, Daphne van Oosten, Roxana-Geanina Vasarhelyi, et al.
Biophysical Reviews (2024) Vol. 16, Iss. 3, pp. 365-382
Open Access | Times Cited: 5
Breaths, Twists, and Turns of Atomistic Nucleosomes
Jan Huertas, Vlad Cojocaru
Journal of Molecular Biology (2020) Vol. 433, Iss. 6, pp. 166744-166744
Open Access | Times Cited: 35
Genome modeling: From chromatin fibers to genes
Stephanie Portillo‐Ledesma, Zilong Li, Tamar Schlick
Current Opinion in Structural Biology (2022) Vol. 78, pp. 102506-102506
Open Access | Times Cited: 22
Regulation of chromatin architecture by transcription factor binding
Stephanie Portillo‐Ledesma, Suckwoo Chung, Jill M. Hoffman, et al.
eLife (2024) Vol. 12
Open Access | Times Cited: 4
Pioneer factors: nature or nurture?
Shane D. Stoeber, Holly Godin, Cheng‐Jian Xu, et al.
Critical Reviews in Biochemistry and Molecular Biology (2024) Vol. 59, Iss. 3-4, pp. 139-153
Open Access | Times Cited: 4
Multiscale Bayesian simulations reveal functional chromatin condensation of gene loci
Giovanni B. Brandani, Chenyang Gu, Soundhararajan Gopi, et al.
PNAS Nexus (2024) Vol. 3, Iss. 6
Open Access | Times Cited: 4
Molecular dynamics simulations of nucleosomes are coming of age
Anastasiia S. Fedulova, Grigoriy A. Armeev, Tatiana A. Romanova, et al.
Wiley Interdisciplinary Reviews Computational Molecular Science (2024) Vol. 14, Iss. 4
Closed Access | Times Cited: 4
Interpretable Protein-DNA Interactions Captured by Structure-Sequence Optimization
Yafan Zhang, Irene Silvernail, Zhuyang Lin, et al.
(2025)
Open Access
Interpretable Protein-DNA Interactions Captured by Structure-Sequence Optimization
Yafan Zhang, Irene Silvernail, Zhuyang Lin, et al.
(2025)
Open Access
In silico nanoscope to study the interplay of genome organization and transcription regulation
Soundhararajan Gopi, Giovanni B. Brandani, Cheng Tan, et al.
Nucleic Acids Research (2025) Vol. 53, Iss. 6
Open Access
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