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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Generation and analysis of context-specific genome-scale metabolic models derived from single-cell RNA-Seq data
Johan Gustafsson, Mihail Anton, Fariba Roshanzamir, et al.
Proceedings of the National Academy of Sciences (2023) Vol. 120, Iss. 6
Open Access | Times Cited: 30

Showing 1-25 of 30 citing articles:

Metabolic regulation of tumor-associated macrophage heterogeneity: insights into the tumor microenvironment and immunotherapeutic opportunities
Yujing Qian, Yujia Yin, Xiaocui Zheng, et al.
Biomarker Research (2024) Vol. 12, Iss. 1
Open Access | Times Cited: 20
Integrating Omics Data in Genome-Scale Metabolic Modeling: A Methodological Perspective for Precision Medicine
Partho Sen, Matej Orešič
Metabolites (2023) Vol. 13, Iss. 7, pp. 855-855
Open Access | Times Cited: 24
Genome-scale models in human metabologenomics
Adil Mardinoğlu, Bernhard Ø. Palsson
Nature Reviews Genetics (2024)
Closed Access | Times Cited: 10
COSMIC-dFBA: A novel multi-scale hybrid framework for bioprocess modeling
Saratram Gopalakrishnan, William Johnson, Miguel Á. Valderrama-Gómez, et al.
Metabolic Engineering (2024) Vol. 82, pp. 183-192
Open Access | Times Cited: 8
Neuroinflammation and acquired traumatic CNS injury: a mini review
Michelle H. Theus
Frontiers in Neurology (2024) Vol. 15
Open Access | Times Cited: 6
Single-cell omics analysis with genome-scale metabolic modeling
Yu Chen, Johan Gustafsson, Jingyu Yang, et al.
Current Opinion in Biotechnology (2024) Vol. 86, pp. 103078-103078
Open Access | Times Cited: 5
RBC-GEM: a Knowledge Base for Systems Biology of Human Red Blood Cell Metabolism
Zachary B. Haiman, Angelo D’Alessandro, Bernhard Ø. Palsson
(2024)
Closed Access | Times Cited: 4
Genome-Scale Metabolic Modeling of Human Pancreas with Focus on Type 2 Diabetes
Mustafa Sertbaş, Kutlu Ö. Ülgen
OMICS A Journal of Integrative Biology (2025)
Closed Access
RBC-GEM: A genome-scale metabolic model for systems biology of the human red blood cell
Zachary B. Haiman, Alicia Key, Angelo D’Alessandro, et al.
PLoS Computational Biology (2025) Vol. 21, Iss. 3, pp. e1012109-e1012109
Open Access
MACAW: a method for semi-automatic detection of errors in genome-scale metabolic models
Devlin C. Moyer, Justin Reimertz, Daniel Segrè, et al.
Genome biology (2025) Vol. 26, Iss. 1
Open Access
Computational modeling of metabolism in oncology
Linda Fong, Meng Jin, Samir Kharbanda, et al.
Elsevier eBooks (2025), pp. 81-107
Closed Access
Intersection of Immunology and Metabolism in Myocardial Disease
Edward B. Thorp, Anja Karlstaedt
Circulation Research (2024) Vol. 134, Iss. 12, pp. 1824-1840
Closed Access | Times Cited: 3
Applications of genome-scale metabolic models to investigate microbial metabolic adaptations in response to genetic or environmental perturbations
Elena Lucy Carter, Chrystala Constantinidou, Mohammad Tauqeer Alam
Briefings in Bioinformatics (2023) Vol. 25, Iss. 1
Open Access | Times Cited: 7
Microbiome modeling: a beginner's guide
Emanuel Lange, Lena Kranert, Jacob Krüger, et al.
Frontiers in Microbiology (2024) Vol. 15
Open Access | Times Cited: 2
Competition and cooperation: The plasticity of bacteria interactions across environments
Josephine Solowiej-Wedderburn, Jennifer T. Pentz, Ludvig Lizana, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 2
A contribution of metabolic engineering to addressing medical problems: Metabolic flux analysis
GaRyoung Lee, Sang Mi Lee, Hyun Uk Kim
Metabolic Engineering (2023) Vol. 77, pp. 283-293
Open Access | Times Cited: 5
State-of the-Art Constraint-Based Modeling of Microbial Metabolism: From Basics to Context-Specific Models with a Focus on Methanotrophs
Mikhail A. Kulyashov, Semyon Kolmykov, Т. М. Хлебодарова, et al.
Microorganisms (2023) Vol. 11, Iss. 12, pp. 2987-2987
Open Access | Times Cited: 4
Bioinformatic Analysis of Metabolomic Data: From Raw Spectra to Biological Insight
Guillem Santamaria, Francisco R. Pinto
BioChem (2024) Vol. 4, Iss. 2, pp. 90-114
Open Access | Times Cited: 1
Semi-Automatic Detection of Errors in Genome-Scale Metabolic Models
Devlin C. Moyer, Justin Reimertz, Daniel Segrè, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Applications of genome-scale metabolic models to the study of human diseases: A systematic review
Nicola Cortese, Anna Procopio, Alessio Merola, et al.
Computer Methods and Programs in Biomedicine (2024) Vol. 256, pp. 108397-108397
Open Access | Times Cited: 1
A fast method for extracting essential and synthetic lethality genes in GEM models
Francisco Guil, José M. Garcı́a
(2023)
Open Access | Times Cited: 2
Adding metabolic tasks to human GEM models to improve the study of gene targets and their associated toxicities
Francisco Guil, Raquel García, José M. Garcı́a
Scientific Reports (2024) Vol. 14, Iss. 1
Open Access
Novel insights into the heterogeneity of FOXP3 + Treg cells in drug-induced allergic reactions through single-cell transcriptomics
Wei Shen, Yibo Liang, Dong Lv, et al.
Immunologic Research (2024) Vol. 72, Iss. 5, pp. 1071-1085
Closed Access
From sampling to simulating: single-cell multiomics in systems pathophysiological modeling
Alexandra Manchel, Michelle Gee, Rajanikanth Vadigepalli
iScience (2024) Vol. 27, Iss. 12, pp. 111322-111322
Closed Access
Spatial Flux Balance Analysis reveals tissue-of-origin and spatially dependent metabolic rewiring in renal and colorectal cancer
Davide Maspero, Giovanni Marteletto, Francesco Lapi, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
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