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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

APPTEST is a novel protocol for the automatic prediction of peptide tertiary structures
Patrick Brendan Timmons, Chandralal M. Hewage
Briefings in Bioinformatics (2021) Vol. 22, Iss. 6
Open Access | Times Cited: 41

Showing 1-25 of 41 citing articles:

Benchmarking AlphaFold2 on peptide structure prediction
Eli Fritz McDonald, Taylor Jones, Lars Plate, et al.
Structure (2022) Vol. 31, Iss. 1, pp. 111-119.e2
Open Access | Times Cited: 78
PEP-FOLD4: a pH-dependent force field for peptide structure prediction in aqueous solution
Julien Rey, Samuel Murail, Sjoerd de Vries, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. W1, pp. W432-W437
Open Access | Times Cited: 52
Machine learning for antimicrobial peptide identification and design
Fangping Wan, Felix Wong, James J. Collins, et al.
Nature Reviews Bioengineering (2024) Vol. 2, Iss. 5, pp. 392-407
Closed Access | Times Cited: 52
ENNAVIA is a novel method which employs neural networks for antiviral and anti-coronavirus activity prediction for therapeutic peptides
Patrick Brendan Timmons, Chandralal M. Hewage
Briefings in Bioinformatics (2021) Vol. 22, Iss. 6
Open Access | Times Cited: 67
Structure prediction of linear and cyclic peptides using CABS-flex
Aleksandra E. Badaczewska-Dawid, Karol Wróblewski, Mateusz Kurciński, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 2
Open Access | Times Cited: 4
AlphaFold and what is next: bridging functional, systems and structural biology
Kacper Szczepski, Łukasz Jaremko
Expert Review of Proteomics (2025)
Closed Access
Peptide conformation search using fragment splicing and tiered energy models
Li Z, Ru Xiao, Zijing Lin
Computational and Theoretical Chemistry (2025) Vol. 1245, pp. 115108-115108
Closed Access
Advances of deep Neural Networks (DNNs) in the development of peptide drugs
Yuzhen Niu, Pingyang Qin, Ping Lin
Future Medicinal Chemistry (2025), pp. 1-15
Closed Access
Protein structure prediction via deep learning: an in-depth review
Yajie Meng, Zhuang Zhang, Chang Zhou, et al.
Frontiers in Pharmacology (2025) Vol. 16
Open Access
Molecular Modelling in Bioactive Peptide Discovery and Characterisation
Clement Agoni, Raúl Fernández-Díaz, Patrick Brendan Timmons, et al.
Biomolecules (2025) Vol. 15, Iss. 4, pp. 524-524
Open Access
Peptide Property Prediction for Mass Spectrometry Using AI: An Introduction to State of the Art Models
Jesse Angelis, Eva Ayla Schröder, Zixuan Xiao, et al.
PROTEOMICS (2025)
Open Access
A Generalized Attraction–Repulsion Potential and Revisited Fragment Library Improves PEP-FOLD Peptide Structure Prediction
Vincent Binette, Normand Mousseau, Pierre Tufféry
Journal of Chemical Theory and Computation (2022) Vol. 18, Iss. 4, pp. 2720-2736
Closed Access | Times Cited: 17
Structural information in therapeutic peptides: Emerging applications in biomedicine
Valentín Iglesias, Oriol Bárcenas, Carlos Pintado‐Grima, et al.
FEBS Open Bio (2024) Vol. 15, Iss. 2, pp. 254-268
Open Access | Times Cited: 3
Exploring protein functions from structural flexibility using CABS‐flex modeling
Chandran Nithin, Rocco Peter Fornari, Smita P. Pilla, et al.
Protein Science (2024) Vol. 33, Iss. 9
Open Access | Times Cited: 3
Identification of B and T Cell Epitopes to Design an Epitope-Based Peptide Vaccine against the Cell Surface Binding Protein of Monkeypox Virus: An Immunoinformatics Study
Lincon Mazumder, Md. Rakibul Hasan, Kanij Fatema, et al.
Journal of Immunology Research (2023) Vol. 2023, pp. 1-14
Open Access | Times Cited: 8
NeuroPep 2.0: An Updated Database Dedicated to Neuropeptide and Its Receptor Annotations
Mingxia Wang, Lei Wang, Wei Xu, et al.
Journal of Molecular Biology (2023) Vol. 436, Iss. 4, pp. 168416-168416
Closed Access | Times Cited: 8
A novel opsonic eCIRP inhibitor for lethal sepsis
Colleen Nofi, Chuyi Tan, Gaifeng Ma, et al.
Journal of Leukocyte Biology (2023) Vol. 115, Iss. 2, pp. 385-400
Closed Access | Times Cited: 7
Biomimetic Synthesis of Nanosilica by Deep Learning‐Designed Peptides and Its Anti‐UV Application
Yuexuan Shu, Jiwei Chen, Beibei Xu, et al.
Advanced Intelligent Systems (2024) Vol. 6, Iss. 8
Open Access | Times Cited: 2
Therapeutic peptides for coronary artery diseases: in silico methods and current perspectives
Ayça Aslan, Selcen Arı Yuka
Amino Acids (2024) Vol. 56, Iss. 1
Open Access | Times Cited: 2
Antibacterial and Anti-Inflammatory Activity of Branched Peptides Derived from Natural Host Defense Sequences
Giada Meogrossi, Eva Tollapi, Alessandro Rencinai, et al.
Journal of Medicinal Chemistry (2024)
Open Access | Times Cited: 2
Structural and Functional Annotation and Molecular Docking Analysis of a Hypothetical Protein from Neisseria gonorrhoeae: An In-Silico Approach
Lincon Mazumder, Md. Rakibul Hasan, Kanij Fatema, et al.
BioMed Research International (2022) Vol. 2022, pp. 1-12
Open Access | Times Cited: 10
A refined pH-dependent coarse-grained model for peptide structure prediction in aqueous solution
Pierre Tufféry, Philippe Derreumaux
Frontiers in Bioinformatics (2023) Vol. 3
Open Access | Times Cited: 6
Exploration of DPP-IV Inhibitory Peptide Design Rules Assisted by the Deep Learning Pipeline That Identifies the Restriction Enzyme Cutting Site
Changge Guan, Jiawei Luo, Shucheng Li, et al.
ACS Omega (2023) Vol. 8, Iss. 42, pp. 39662-39672
Open Access | Times Cited: 6
Exploring novel ANGICon-EIPs through ameliorated peptidomics techniques: Can deep learning strategies as a core breakthrough in peptide structure and function prediction?
Wei Jia, Jian Peng, Yan Zhang, et al.
Food Research International (2023) Vol. 174, pp. 113640-113640
Closed Access | Times Cited: 6
Comparative Evaluation of Existing and Rationally Designed Novel Antimicrobial Peptides for Treatment of Skin and Soft Tissue Infections
Anna Ramata‐Stunda, Mārtiņš Borodušķis, Elza Kaktina, et al.
Antibiotics (2023) Vol. 12, Iss. 3, pp. 551-551
Open Access | Times Cited: 5
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