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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Comprehensive evaluation of noise reduction methods for single-cell RNA sequencing data
Shih‐Kai Chu, Shilin Zhao, Yu Shyr, et al.
Briefings in Bioinformatics (2021) Vol. 23, Iss. 2
Open Access | Times Cited: 30

Showing 1-25 of 30 citing articles:

Single-cell and spatial multi-omics in the plant sciences: Technical advances, applications, and perspectives
Xiaole Yu, Zhixin Liu, Xuwu Sun
Plant Communications (2022) Vol. 4, Iss. 3, pp. 100508-100508
Open Access | Times Cited: 58
From multitude to singularity: An up-to-date overview of scRNA-seq data generation and analysis
Giulia Carangelo, Alberto Magi, Roberto Semeraro
Frontiers in Genetics (2022) Vol. 13
Open Access | Times Cited: 21
Enhancing single-cell transcriptomics using interposed anchor oligonucleotide sequences
Jianfeng Sun, Martin Philpott, Danson Loi, et al.
Communications Biology (2025) Vol. 8, Iss. 1
Open Access
Combining single-cell ATAC and RNA sequencing for supervised cell annotation
Jaidip Gill, Abhijit Dasgupta, Brychan Manry, et al.
BMC Bioinformatics (2025) Vol. 26, Iss. 1
Open Access
Branching topology of the human embryo transcriptome revealed by Entropy Sort Feature Weighting
Arthur Radley, Stefan Boeing, Austin Smith
Development (2024) Vol. 151, Iss. 11
Open Access | Times Cited: 3
Robust probabilistic modeling for single-cell multimodal mosaic integration and imputation via scVAEIT
Jin‐Hong Du, Zhanrui Cai, Kathryn Roeder
Proceedings of the National Academy of Sciences (2022) Vol. 119, Iss. 49
Open Access | Times Cited: 14
The Power of Single-Cell RNA Sequencing in eQTL Discovery
Maleeha Maria, Negar Pouyanfar, Tiit Örd, et al.
Genes (2022) Vol. 13, Iss. 3, pp. 502-502
Open Access | Times Cited: 13
Single-cell multiomics revealed the dynamics of antigen presentation, immune response and T cell activation in the COVID-19 positive and recovered individuals
Partha Chattopadhyay, Kriti Khare, Manish Kumar, et al.
Frontiers in Immunology (2022) Vol. 13
Open Access | Times Cited: 13
A tissue centric atlas of cell type transcriptome enrichment signatures
Philip Dusart, Sofia Öling, Eike C. Struck, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 7
Meta-analysis of single-cell RNA-sequencing data for depicting the transcriptomic landscape of chronic obstructive pulmonary disease
Yubin Lee, Jaeseung Song, Yeonbin Jeong, et al.
Computers in Biology and Medicine (2023) Vol. 167, pp. 107685-107685
Open Access | Times Cited: 7
scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis
Tian-Yu Liu, Tianqi Chen, Wangjie Zheng, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 7
The effect of data transformation on low-dimensional integration of single-cell RNA-seq
Youngjun Park, Anne-Christin Hauschild
BMC Bioinformatics (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 2
Single-cell RNA sequencing algorithms underestimate changes in transcriptional noise compared to single-molecule RNA imaging
Neha Khetan, B. M. Zuckerman, Giuliana Calia, et al.
Cell Reports Methods (2024), pp. 100933-100933
Closed Access | Times Cited: 2
Anchor-Enhanced Bead Design for Reduced Oligonucleotide Synthesis Errors in Single-cell sequencing
Jianfeng Sun, Martin Philpott, Danson Loi, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
scRGCL: a cell type annotation method for single-cell RNA-seq data using residual graph convolutional neural network with contrastive learning
Lin Yuan, Shengguo Sun, Yufeng Jiang, et al.
Briefings in Bioinformatics (2024) Vol. 26, Iss. 1
Open Access | Times Cited: 1
HyperCell: Advancing Cell Type Classification with Hyperdimensional Computing
Hossein Mohammadi, Maziyar Baranpouyan, Krishnaprasad Thirunarayan, et al.
(2024), pp. 1-4
Closed Access | Times Cited: 1
Comparative analysis between RNA-seq and single-molecule RNA FISH indicates that the pyrimidine nucleobase idoxuridine (IdU) globally amplifies transcriptional noise
Giuliana Calia, Xinyue Chen, B. M. Zuckerman, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 3
Expression quantitative trait locus studies in the era of single-cell omics
Jie Luo, Xinyi Wu, Yuan Cheng, et al.
Frontiers in Genetics (2023) Vol. 14
Open Access | Times Cited: 3
Branching topology of the human embryo transcriptome revealed by entropy sort feature weighting
Arthur Radley, Austin Smith
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
Classification of colon cancer patients into consensus molecular subtypes using support vector machines
Necla Koçhan, Barış Emre Dayanç
TURKISH JOURNAL OF BIOLOGY (2023) Vol. 47, Iss. 6, pp. 406-412
Open Access | Times Cited: 2
Comparison of cell state models derived from single-cell RNA sequencing data: graph versus multi-dimensional space
Heyrim Cho, Ya‐Huei Kuo, Russell C. Rockne
Mathematical Biosciences & Engineering (2022) Vol. 19, Iss. 8, pp. 8505-8536
Open Access | Times Cited: 3
Machine Learning-based Approaches to Integrate Heterogeneous Data for Biological Knowledge Transfer
Youngjun Park
(2024)
Open Access
Quantitative comparison of single-cell RNA sequencing versus single-molecule RNA imaging for quantifying transcriptional noise
Neha Khetan, B. M. Zuckerman, Giuliana Calia, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Calibrating dimension reduction hyperparameters in the presence of noise
Justin Lin, Julia Fukuyama
PLoS Computational Biology (2024) Vol. 20, Iss. 9, pp. e1012427-e1012427
Open Access
All the single cells: Single‐cell transcriptomics/epigenomics experimental design and analysis considerations for glial biologists
Katherine E. Prater, Kevin Lin
Glia (2024) Vol. 73, Iss. 3, pp. 451-473
Open Access
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