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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

HCRNet: high-throughput circRNA-binding event identification from CLIP-seq data using deep temporal convolutional network
Yuning Yang, Zilong Hou, Yansong Wang, et al.
Briefings in Bioinformatics (2022) Vol. 23, Iss. 2
Closed Access | Times Cited: 23

Showing 23 citing articles:

A Transformer-Based Ensemble Framework for the Prediction of Protein–Protein Interaction Sites
Minjie Mou, Ziqi Pan, Zhimeng Zhou, et al.
Research (2023) Vol. 6
Open Access | Times Cited: 57
SSCRB: Predicting circRNA-RBP Interaction Sites Using a Sequence and Structural Feature-Based Attention Model
Liwei Liu, Yuxiao Wei, Qi Zhang, et al.
IEEE Journal of Biomedical and Health Informatics (2024) Vol. 28, Iss. 3, pp. 1762-1772
Closed Access | Times Cited: 22
An Encoding-Decoding Framework Based on CNN for circRNA-RBP Binding Sites Prediction
Yajing Guo, Xiujuan Lei, Yi Pan
Chinese Journal of Electronics (2024) Vol. 33, Iss. 1, pp. 256-263
Open Access | Times Cited: 9
Deep learning and ensemble deep learning for circRNA-RBP interaction prediction in the last decade: A review
Dilan Lasantha, Sugandima Vidanagamachchi, Sam Nallaperuma
Engineering Applications of Artificial Intelligence (2023) Vol. 123, pp. 106352-106352
Closed Access | Times Cited: 19
Dynamic characterization and interpretation for protein-RNA interactions across diverse cellular conditions using HDRNet
Haoran Zhu, Yuning Yang, Yunhe Wang, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 19
CircSI-SSL: circRNA-binding site identification based on self-supervised learning
Chao Cao, Chunyu Wang, Shuhong Yang, et al.
Bioinformatics (2024) Vol. 40, Iss. 1
Open Access | Times Cited: 7
Deciphering 3'UTR Mediated Gene Regulation Using Interpretable Deep Representation Learning
Yuning Yang, Gen Li, Kuan Pang, et al.
Advanced Science (2024) Vol. 11, Iss. 39
Open Access | Times Cited: 6
CircSSNN: circRNA-binding site prediction via sequence self-attention neural networks with pre-normalization
Chao Cao, Shuhong Yang, Mengli Li, et al.
BMC Bioinformatics (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 14
CRIECNN: Ensemble convolutional neural network and advanced feature extraction methods for the precise forecasting of circRNA-RBP binding sites
Dilan Lasantha, Sugandima Vidanagamachchi, Sam Nallaperuma
Computers in Biology and Medicine (2024) Vol. 174, pp. 108466-108466
Closed Access | Times Cited: 5
A Brief Survey of Deep Learning-based Models for CircRNA-Protein Binding Sites Prediction
Zhen Shen, Lin Yuan, Wenzheng Bao, et al.
Neurocomputing (2025), pp. 129637-129637
Open Access
Large language model applications in nucleic acid research
Lei Li, Zhao Cheng
(2025) Vol. 2, Iss. 1
Closed Access
NeuroPred-CLQ: incorporating deep temporal convolutional networks and multi-head attention mechanism to predict neuropeptides
Shouzhi Chen, Qing Li, Jianping Zhao, et al.
Briefings in Bioinformatics (2022) Vol. 23, Iss. 5
Closed Access | Times Cited: 17
ASCRB: Multi-view based attentional feature selection for CircRNA-binding site prediction
Lei Li, Zhigang Xue, Xiuquan Du
Computers in Biology and Medicine (2023) Vol. 162, pp. 107077-107077
Closed Access | Times Cited: 7
SOFB is a comprehensive ensemble deep learning approach for elucidating and characterizing protein-nucleic-acid-binding residues
Bin Zhang, Zilong Hou, Yuning Yang, et al.
Communications Biology (2024) Vol. 7, Iss. 1
Open Access | Times Cited: 1
CRBPSA: CircRNA-RBP interaction sites identification using sequence structural attention model
Chao Cao, Chunyu Wang, Qi Dai, et al.
BMC Biology (2024) Vol. 22, Iss. 1
Open Access | Times Cited: 1
JLCRB: A unified multi-view-based joint representation learning for CircRNA binding sites prediction
Xiuquan Du, Zhigang Xue
Journal of Biomedical Informatics (2022) Vol. 136, pp. 104231-104231
Open Access | Times Cited: 7
Nucleotide-level prediction of CircRNA-protein binding based on fully convolutional neural network
Zhen Shen, Wei Liu, Shujun Zhao, et al.
Frontiers in Genetics (2023) Vol. 14
Open Access | Times Cited: 2
Circ_C4orf36 Promotes the Proliferation and Osteogenic Differentiation of BMSCs by Regulating VEGFA
Zhimin Zhang, Chun-Xia Huang, Jianzhong Huo
Biochemical Genetics (2022) Vol. 61, Iss. 3, pp. 931-944
Closed Access | Times Cited: 3
Prediction of Circular RNA-RBP Binding Sites Based on Multi-source Features and Cascade Forest
Yanqi Guo, Qingfang Meng, Qiang Zhang, et al.
Lecture notes in computer science (2024), pp. 290-301
Closed Access
An Integrated TCN-CrossMHA Model for Predicting circRNA-RBP Binding Sites
Yajing Guo, Xiujuan Lei, Shuyu Li
Interdisciplinary Sciences Computational Life Sciences (2024)
Closed Access
GNet: An integrated context-aware neural framework for transcription factor binding signal at single nucleotide resolution prediction
Jujuan Zhuang, Kexin Feng, Xinyang Teng, et al.
Mathematical Biosciences & Engineering (2023) Vol. 20, Iss. 9, pp. 15809-15829
Open Access | Times Cited: 1
Predicting transcription factor binding sites by dual-stream multiple instance learning network
Ruqun Song, Xiuquan Du
2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (2022) Vol. 8, pp. 3391-3398
Closed Access | Times Cited: 1
CircSSNN: circRNA-binding site prediction via sequence self-attention neural networks with pre-normalization
Chao Cao, Shuhong Yang, Mengli Li, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
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