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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

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Showing 1-25 of 59 citing articles:

iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria
Simon Roux, Antônio Pedro Camargo, Felipe H. Coutinho, et al.
PLoS Biology (2023) Vol. 21, Iss. 4, pp. e3002083-e3002083
Open Access | Times Cited: 205
PhaTYP: predicting the lifestyle for bacteriophages using BERT
Jiayu Shang, Xubo Tang, Yanni Sun
Briefings in Bioinformatics (2022) Vol. 24, Iss. 1
Open Access | Times Cited: 112
PhaBOX: a web server for identifying and characterizing phage contigs in metagenomic data
Jiayu Shang, Cheng Peng, Herui Liao, et al.
Bioinformatics Advances (2023) Vol. 3, Iss. 1
Open Access | Times Cited: 45
The gut ileal mucosal virome is disturbed in patients with Crohn’s disease and exacerbates intestinal inflammation in mice
Zhirui Cao, Dejun Fan, Yang Sun, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 18
Correlation between the gut microbiome and neurodegenerative diseases: a review of metagenomics evidence
Xiaoyan Liu, Yi Liu, Junlin Liu, et al.
Neural Regeneration Research (2023) Vol. 19, Iss. 4, pp. 833-845
Open Access | Times Cited: 31
Prediction of Klebsiella phage-host specificity at the strain level
Dimitri Boeckaerts, Michiel Stock, Celia Ferriol-González, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 14
Revisiting therapeutic options against Resistant Klebsiella Pneumoniae infection: phage therapy is key
Jiabao Xing, Rong-jia Han, Jinxin Zhao, et al.
Microbiological Research (2025), pp. 128083-128083
Closed Access | Times Cited: 1
Expansion of Colorectal Cancer Biomarkers Based on Gut Bacteria and Viruses
Jia Zhang, Yangting He, Lu Xia, et al.
Cancers (2022) Vol. 14, Iss. 19, pp. 4662-4662
Open Access | Times Cited: 23
Enhanced Bacterium–Phage Symbiosis in Attached Microbial Aggregates on a Membrane Surface Facing Elevated Hydraulic Stress
Yixiao Tan, Pingfeng Yu, Dan Huang, et al.
Environmental Science & Technology (2023) Vol. 57, Iss. 45, pp. 17324-17337
Closed Access | Times Cited: 14
Enhancing plant growth in biofertilizer-amended soil through nitrogen-transforming microbial communities
Liangzhi Li, Zhengrong Hu, Ge Tan, et al.
Frontiers in Plant Science (2023) Vol. 14
Open Access | Times Cited: 14
Characterizing the gut phageome and phage-borne antimicrobial resistance genes in pigs
Jun Hu, Jianwei Chen, Yangfan Nie, et al.
Microbiome (2024) Vol. 12, Iss. 1
Open Access | Times Cited: 5
iPHoP: an integrated machine-learning framework to maximize host prediction for metagenome-assembled virus genomes
Simon Roux, Antônio Pedro Camargo, Felipe H. Coutinho, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 21
PhaVIP: Phage VIrion Protein classification based on chaos game representation and Vision Transformer
Jiayu Shang, Cheng Peng, Xubo Tang, et al.
Bioinformatics (2023) Vol. 39, Iss. Supplement_1, pp. i30-i39
Open Access | Times Cited: 12
The gut virome and the relevance of temperate phages in human health
Laura Avellaneda-Franco, Sofia Dahlman, Jeremy J. Barr
Frontiers in Cellular and Infection Microbiology (2023) Vol. 13
Open Access | Times Cited: 11
Bacteriophages: Vectors of or weapons against the transmission of antibiotic resistance genes in hospital wastewater systems?
Xinyi Shuai, Zhenchao Zhou, Xiaoliang Ba, et al.
Water Research (2023) Vol. 248, pp. 120833-120833
Closed Access | Times Cited: 11
Biological and bioinformatic tools for the discovery of unknown phage–host combinations
Jennifer Mahony
Current Opinion in Microbiology (2024) Vol. 77, pp. 102426-102426
Open Access | Times Cited: 4
Gut phages and their interactions with bacterial and mammalian hosts
Marshall Godsil, Nathaniel L. Ritz, Siddarth Venkatesh, et al.
Journal of Bacteriology (2025)
Open Access
Red Mud Potentially Alleviates Ammonia Nitrogen Inhibition in Swine Manure Anaerobic Digestion by Enhancing Phage-Mediated Ammonia Assimilation
Yulong Peng, Luhua Jiang, Junzhao Wu, et al.
Microorganisms (2025) Vol. 13, Iss. 3, pp. 690-690
Open Access
Unveiling the role of phages in shaping the periodontal microbial ecosystem
Fangfang Yao, Jiajun He, Raphael Nyaruaba, et al.
mSystems (2025)
Open Access
Phage therapy for Klebsiella pneumoniae: Understanding bacteria–phage interactions for therapeutic innovations
Julie Le Bris, Nathalie Chen, Adeline Supandy, et al.
PLoS Pathogens (2025) Vol. 21, Iss. 4, pp. e1012971-e1012971
Open Access
A bacteriophage-conditional mouse model reveals the impact of phages within a conventionally colonized gut microbiota
Hollyn Claire Franklin, Rita Makhlouf, Anh D. Ha, et al.
Cell Host & Microbe (2025)
Closed Access
Exploring deep learning in phage discovery and characterization
Malena Regina De Freitas E SILVA, Vitória Yumi Uetuki Nicoleti, Bárbara Rodrigues, et al.
Virology (2025) Vol. 609, pp. 110559-110559
Closed Access
Identifying ARG-carrying bacteriophages in a lake replenished by reclaimed water using deep learning techniques
Donglin Wang, Jiayu Shang, Hui Lin, et al.
Water Research (2023) Vol. 248, pp. 120859-120859
Closed Access | Times Cited: 9
Unveiling the overlooked small-sized microbiome in river ecosystems
Fang-Zhou Gao, Li‐Xin Hu, You‐Sheng Liu, et al.
Water Research (2024) Vol. 265, pp. 122302-122302
Closed Access | Times Cited: 3
Virus-host interactions predictor (VHIP): Machine learning approach to resolve microbial virus-host interaction networks
G Eric Bastien, Rachel Cable, Cecelia Batterbee, et al.
PLoS Computational Biology (2024) Vol. 20, Iss. 9, pp. e1011649-e1011649
Open Access | Times Cited: 3
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