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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Comprehensive evaluation of peptide de novo sequencing tools for monoclonal antibody assembly
Denis Beslic, Georg Tscheuschner, Bernhard Y. Renard, et al.
Briefings in Bioinformatics (2022) Vol. 24, Iss. 1
Open Access | Times Cited: 41

Showing 1-25 of 41 citing articles:

Artificial Intelligence in Molecular Medicine
Bruna Gomes, Euan A. Ashley
New England Journal of Medicine (2023) Vol. 388, Iss. 26, pp. 2456-2465
Closed Access | Times Cited: 79
Sequence-to-sequence translation from mass spectra to peptides with a transformer model
Melih Yilmaz, William E. Fondrie, Wout Bittremieux, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 26
Introducing π-HelixNovo for practical large-scale de novo peptide sequencing
Tingpeng Yang, Tianze Ling, Boyan Sun, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 2
Open Access | Times Cited: 17
De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments
Kevin Eloff, Konstantinos Kalogeropoulos, Oliver Morell, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 27
Sequence-to-sequence translation from mass spectra to peptides with a transformer model
Melih Yilmaz, William E. Fondrie, Wout Bittremieux, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 25
Metaproteomics Beyond Databases: Addressing the Challenges and Potentials of De Novo Sequencing
Tim Van Den Bossche, Denis Beslic, Sam van Puyenbroeck, et al.
PROTEOMICS (2025)
Closed Access | Times Cited: 1
Algorithms for de-novo sequencing of peptides by tandem mass spectrometry: A review
Cheuk Chi Albert Ng, Yin Zhou, Zhongping Yao
Analytica Chimica Acta (2023) Vol. 1268, pp. 341330-341330
Closed Access | Times Cited: 22
PowerNovo: de novo peptide sequencing via tandem mass spectrometry using an ensemble of transformer and BERT models
Denis V. Petrovskiy, Kirill S. Nikolsky, Liudmila I. Kulikova, et al.
Scientific Reports (2024) Vol. 14, Iss. 1
Open Access | Times Cited: 8
Spotlight on 10x Visium: a multi-sample protocol comparison of spatial technologies
Mei R. M. Du, Changqing Wang, Charity W. Law, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 7
InstaNovo enables diffusion-powered de novo peptide sequencing in large-scale proteomics experiments
Kevin Eloff, Konstantinos Kalogeropoulos, Amandla Mabona, et al.
Nature Machine Intelligence (2025)
Open Access
MegaPX: fast and space-efficient peptide assignment method using IBF-based multi-indexing
Ahmad Lutfi, Tanja Holstein, Sandro Andreotti, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Do-It-Yourself De Novo Antibody Sequencing Workflow that Achieves Complete Accuracy of the Variable Regions
Mengting He, Ning Li, Jian-Hua Wang, et al.
Journal of Proteome Research (2025)
Closed Access
Transformer-Based De Novo Peptide Sequencing for Data-Independent Acquisition Mass Spectrometry
Shiva Ebrahimi, Xuan Guo
(2023), pp. 28-35
Open Access | Times Cited: 8
Structural Characterization of a Pathogenic Antibody Underlying Vaccine-Induced Immune Thrombotic Thrombocytopenia (VITT)
Son Nguyen, Si-Hung Le, Daniil G. Ivanov, et al.
Analytical Chemistry (2024) Vol. 96, Iss. 16, pp. 6209-6217
Open Access | Times Cited: 2
Exploring the dynamic landscape of immunopeptidomics: Unravelling posttranslational modifications and navigating bioinformatics terrain
Daniel Flender, Frédérique Vilenne, Charlotte Adams, et al.
Mass Spectrometry Reviews (2024)
Open Access | Times Cited: 2
NovoLign: metaproteomics by sequence alignment
Hugo B.C. Kleikamp, Ramon van der Zwaan, Ramon van Valderen, et al.
ISME Communications (2024) Vol. 4, Iss. 1
Open Access | Times Cited: 2
Deep Learning Methods for De Novo Peptide Sequencing
Wout Bittremieux, Varun Ananth, William E. Fondrie, et al.
Mass Spectrometry Reviews (2024)
Closed Access | Times Cited: 2
Transformer-based de novo peptide sequencing for data-independent acquisition mass spectrometry.
Shiva Ebrahimi, Xuan Guo
arXiv (Cornell University) (2024)
Open Access | Times Cited: 1
Chitosan Nanoparticles Loaded with Velvet Antler Polypeptides for Intervention in Autoimmune Hepatitis
Jia Kang, Tong Zhang, Hongyue Wang, et al.
Food Bioscience (2024), pp. 105102-105102
Closed Access | Times Cited: 1
Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins
Ismael Rodríguez Palomo, Bharath Nair, Yun Chiang, et al.
Peer Community Journal (2024) Vol. 4
Open Access | Times Cited: 1
Application of graph models to the identification of transcriptomic oncometabolic pathways in human hepatocellular carcinoma
Sergio Barace, Eva Santamaría, Stefany Infante, et al.
medRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Revamping Hepatocellular Carcinoma Immunotherapy: The Advent of Microbial Neoantigen Vaccines
Junze Liang, Yanxia Liao, Zhiwei Tu, et al.
Vaccines (2024) Vol. 12, Iss. 8, pp. 930-930
Open Access | Times Cited: 1
TCR-H: Machine Learning Prediction of T-cell Receptor Epitope Binding on Unseen Datasets
Rajitha Rajeshwar T., Omar Demerdash, Jeremy C. Smith
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 3
Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins
Ismael Rodríguez Palomo, Bharath Nair, Yun Chiang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 3
Structural characterization of a pathogenic antibody underlying vaccine-induced immune thrombotic thrombocytopenia (VITT)
Son Nguyen, Si-Hung Le, Daniil G. Ivanov, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
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