
OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!
If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.
Requested Article:
Benchmarking of computational methods for m6A profiling with Nanopore direct RNA sequencing
Simone Maestri, Mattia Furlan, Logan Mulroney, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 2
Open Access | Times Cited: 23
Simone Maestri, Mattia Furlan, Logan Mulroney, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 2
Open Access | Times Cited: 23
Showing 23 citing articles:
Transfer learning enables identification of multiple types of RNA modifications using nanopore direct RNA sequencing
You Wu, Wenna Shao, Mengxiao Yan, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 18
You Wu, Wenna Shao, Mengxiao Yan, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 18
Charting the epitranscriptomic landscape across RNA biotypes using native RNA nanopore sequencing
Gregor Diensthuber, Eva Maria Novoa
Molecular Cell (2025) Vol. 85, Iss. 2, pp. 276-289
Closed Access | Times Cited: 2
Gregor Diensthuber, Eva Maria Novoa
Molecular Cell (2025) Vol. 85, Iss. 2, pp. 276-289
Closed Access | Times Cited: 2
De novo basecalling of RNA modifications at single molecule and nucleotide resolution
Sonia Cruciani, Anna Delgado-Tejedor, Leszek P. Pryszcz, et al.
Genome biology (2025) Vol. 26, Iss. 1
Open Access | Times Cited: 2
Sonia Cruciani, Anna Delgado-Tejedor, Leszek P. Pryszcz, et al.
Genome biology (2025) Vol. 26, Iss. 1
Open Access | Times Cited: 2
A systematic benchmark of Nanopore long-read RNA sequencing for transcript-level analysis in human cell lines
Ying Chen, N. Davidson, Yuk Kei Wan, et al.
Nature Methods (2025)
Open Access | Times Cited: 2
Ying Chen, N. Davidson, Yuk Kei Wan, et al.
Nature Methods (2025)
Open Access | Times Cited: 2
Direct RNA sequencing (RNA004) allows for improved transcriptome assessment and near real-time tracking of methylation for medical applications
Charlotte Hewel, Anna Wierczeiko, Johannes Miedema, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 6
Charlotte Hewel, Anna Wierczeiko, Johannes Miedema, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 6
Native RNA nanopore sequencing reveals antibiotic-induced loss of rRNA modifications in the A- and P-sites
Anna Delgado-Tejedor, Rebeca Medina, Oguzhan Begik, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 5
Anna Delgado-Tejedor, Rebeca Medina, Oguzhan Begik, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 5
Isoform-level profiling of m6A epitranscriptomic signatures in human brain
Josie Gleeson, Sachithrani U. Madugalle, Catriona McLean, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 4
Josie Gleeson, Sachithrani U. Madugalle, Catriona McLean, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 4
Exploring RNA modifications in infectious non-coding circular RNAs
Pavel Vopálenský, Anton Škríba, Michela Chiumenti, et al.
RNA Biology (2025)
Open Access
Pavel Vopálenský, Anton Škríba, Michela Chiumenti, et al.
RNA Biology (2025)
Open Access
Non-coding RNA as a key regulator and novel target of apoptosis in diabetic cardiomyopathy: Current status and future prospects
Yicheng Liu, Jie Yuan, Yuhang Zhang, et al.
Cellular Signalling (2025) Vol. 128, pp. 111632-111632
Closed Access
Yicheng Liu, Jie Yuan, Yuhang Zhang, et al.
Cellular Signalling (2025) Vol. 128, pp. 111632-111632
Closed Access
A Comparative Evaluation of Computational Models for RNA modification detection using Nanopore sequencing with RNA004 Chemistry
Yongji Zou, Mian Umair Ahsan, Joe Chan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Yongji Zou, Mian Umair Ahsan, Joe Chan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
The mind–machine connection: adaptive information processing and new technologies promoting mental health in older adults
Samildes Silva Magalhães, Ana Maria Lucas-Ochoa, Ana María González Cuello, et al.
The Neuroscientist (2025)
Closed Access
Samildes Silva Magalhães, Ana Maria Lucas-Ochoa, Ana María González Cuello, et al.
The Neuroscientist (2025)
Closed Access
Toward the use of nanopore RNA sequencing technologies in the clinic: challenges and opportunities
Xanthi-Lida Katopodi, Oguzhan Begik, Eva Maria Novoa
Nucleic Acids Research (2025) Vol. 53, Iss. 5
Open Access
Xanthi-Lida Katopodi, Oguzhan Begik, Eva Maria Novoa
Nucleic Acids Research (2025) Vol. 53, Iss. 5
Open Access
Edge of RNA m6A modification on LINE-1 retrotransposons in central nervous system: merely a transcriptional control?
Amit Sharma, Tikam Chand Dakal, Ingo Schmidt‐Wolf, et al.
Epigenomics (2025), pp. 1-3
Closed Access
Amit Sharma, Tikam Chand Dakal, Ingo Schmidt‐Wolf, et al.
Epigenomics (2025), pp. 1-3
Closed Access
ModiDeC: a multi-RNA modification classifier for direct nanopore sequencing
Susanne Gerber, Nicolò Alagna, Stefan Mündnich, et al.
Research Square (Research Square) (2025)
Open Access
Susanne Gerber, Nicolò Alagna, Stefan Mündnich, et al.
Research Square (Research Square) (2025)
Open Access
Direct RNA sequencing enables improved transcriptome assessment and tracking of RNA modifications for medical applications
Susanne Gerber, Charlotte Hewel, Anna Wierczeiko, et al.
Research Square (Research Square) (2025)
Closed Access
Susanne Gerber, Charlotte Hewel, Anna Wierczeiko, et al.
Research Square (Research Square) (2025)
Closed Access
Transcriptomics in the era of long-read sequencing
Carolina Monzó, Tianyuan Liu, Ana Conesa
Nature Reviews Genetics (2025)
Closed Access
Carolina Monzó, Tianyuan Liu, Ana Conesa
Nature Reviews Genetics (2025)
Closed Access
The RMaP challenge of predicting RNA modifications by nanopore sequencing
Jannes Spangenberg, Stefan Mündnich, Anne Busch, et al.
Communications Chemistry (2025) Vol. 8, Iss. 1
Open Access
Jannes Spangenberg, Stefan Mündnich, Anne Busch, et al.
Communications Chemistry (2025) Vol. 8, Iss. 1
Open Access
Streamlining remote nanopore data access with slow5curl
B. L. William Wong, James M. Ferguson, Yanga Aude Jessica, et al.
GigaScience (2024) Vol. 13
Open Access | Times Cited: 1
B. L. William Wong, James M. Ferguson, Yanga Aude Jessica, et al.
GigaScience (2024) Vol. 13
Open Access | Times Cited: 1
Analysis of total RNA as a potential biomarker of developmental neurotoxicity in silico
Snežana M Jovičić
Health Informatics Journal (2024) Vol. 30, Iss. 4
Open Access | Times Cited: 1
Snežana M Jovičić
Health Informatics Journal (2024) Vol. 30, Iss. 4
Open Access | Times Cited: 1
REDIportal: toward an integrated view of the A-to-I editing
Pietro D’Addabbo, Roni Cohen‐Fultheim, Itamar Twersky, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D233-D242
Open Access | Times Cited: 1
Pietro D’Addabbo, Roni Cohen‐Fultheim, Itamar Twersky, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D233-D242
Open Access | Times Cited: 1
Exploring RNA modifications in infectious non-coding circular RNAs
Pavel Vopálenský, Anton Škríba, Michela Chiumenti, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Pavel Vopálenský, Anton Škríba, Michela Chiumenti, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Exploring the Biological Role of METTL3 in Kummell’s Disease
Akerman Ke
Advances in Clinical Medicine (2024) Vol. 14, Iss. 06, pp. 82-87
Closed Access
Akerman Ke
Advances in Clinical Medicine (2024) Vol. 14, Iss. 06, pp. 82-87
Closed Access
A comprehensive survey of RNA modifications in a human transcriptome
Logan Mulroney, Lucia Coscujuela Tarrero, Paola Maragno, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Logan Mulroney, Lucia Coscujuela Tarrero, Paola Maragno, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access