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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

VPF-Class: taxonomic assignment and host prediction of uncultivated viruses based on viral protein families
Joan Carles Pons, David Páez-Espino, Gabriel Riera, et al.
Bioinformatics (2021) Vol. 37, Iss. 13, pp. 1805-1813
Open Access | Times Cited: 84

Showing 1-25 of 84 citing articles:

iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria
Simon Roux, Antônio Pedro Camargo, Felipe H. Coutinho, et al.
PLoS Biology (2023) Vol. 21, Iss. 4, pp. e3002083-e3002083
Open Access | Times Cited: 205
PhaTYP: predicting the lifestyle for bacteriophages using BERT
Jiayu Shang, Xubo Tang, Yanni Sun
Briefings in Bioinformatics (2022) Vol. 24, Iss. 1
Open Access | Times Cited: 112
Phage family classification under Caudoviricetes: A review of current tools using the latest ICTV classification framework
Yilin Zhu, Jiayu Shang, Cheng Peng, et al.
Frontiers in Microbiology (2022) Vol. 13
Open Access | Times Cited: 87
Large language models improve annotation of prokaryotic viral proteins
Zachary Flamholz, Steven J. Biller, Libusha Kelly
Nature Microbiology (2024) Vol. 9, Iss. 2, pp. 537-549
Open Access | Times Cited: 33
COBRA improves the completeness and contiguity of viral genomes assembled from metagenomes
Lin-Xing Chen, Jillian F. Banfield
Nature Microbiology (2024) Vol. 9, Iss. 3, pp. 737-750
Open Access | Times Cited: 20
Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation
Akbar Adjie Pratama, Benjamin Bolduc, Ahmed A. Zayed, et al.
PeerJ (2021) Vol. 9, pp. e11447-e11447
Open Access | Times Cited: 91
Global overview and major challenges of host prediction methods for uncultivated phages
Clément Coclet, Simon Roux
Current Opinion in Virology (2021) Vol. 49, pp. 117-126
Open Access | Times Cited: 79
Virus classification for viral genomic fragments using PhaGCN2
Jing‐Zhe Jiang, Wen-Guang Yuan, Jiayu Shang, et al.
Briefings in Bioinformatics (2022) Vol. 24, Iss. 1
Open Access | Times Cited: 64
CHERRY: a Computational metHod for accuratE pRediction of virus–pRokarYotic interactions using a graph encoder–decoder model
Jiayu Shang, Yanni Sun
Briefings in Bioinformatics (2022) Vol. 23, Iss. 5
Open Access | Times Cited: 59
Metagenome-derived virus-microbe ratios across ecosystems
Purificación López‐García, Ana Gutiérrez‐Preciado, Mart Krupovìč, et al.
The ISME Journal (2023) Vol. 17, Iss. 10, pp. 1552-1563
Open Access | Times Cited: 41
Thousands of small, novel genes predicted in global phage genomes
Brayon J. Fremin, Ami S. Bhatt, Nikos C. Kyrpides, et al.
Cell Reports (2022) Vol. 39, Iss. 12, pp. 110984-110984
Open Access | Times Cited: 40
Novel Viral Communities Potentially Assisting in Carbon, Nitrogen, and Sulfur Metabolism in the Upper Slope Sediments of Mariana Trench
Jiulong Zhao, Hongmei Jing, Zengmeng Wang, et al.
mSystems (2022) Vol. 7, Iss. 1
Open Access | Times Cited: 39
Rhizosphere phage communities drive soil suppressiveness to bacterial wilt disease
Keming Yang, Xiaofang Wang, Rujiao Hou, et al.
Microbiome (2023) Vol. 11, Iss. 1
Open Access | Times Cited: 37
Hi-C metagenome sequencing reveals soil phage–host interactions
Ruonan Wu, Michelle Davison, William Nelson, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 33
Correlation between the gut microbiome and neurodegenerative diseases: a review of metagenomics evidence
Xiaoyan Liu, Yi Liu, Junlin Liu, et al.
Neural Regeneration Research (2023) Vol. 19, Iss. 4, pp. 833-845
Open Access | Times Cited: 31
Lysogenic bacteriophages encoding arsenic resistance determinants promote bacterial community adaptation to arsenic toxicity
Xiang Tang, Linrui Zhong, Lin Tang, et al.
The ISME Journal (2023) Vol. 17, Iss. 7, pp. 1104-1115
Open Access | Times Cited: 28
Viral metagenome reveals microbial hosts and the associated antibiotic resistome on microplastics
Ruilong Li, Xin‐Li An, Yijin Wang, et al.
Nature Water (2024) Vol. 2, Iss. 6, pp. 553-565
Closed Access | Times Cited: 12
Airborne antibiotic resistome and microbiome in pharmaceutical factories
Hong Bai, Liang-Ying He, Fang-Zhou Gao, et al.
Environment International (2024) Vol. 186, pp. 108639-108639
Open Access | Times Cited: 9
Are You My Host? An Overview of Methods Used to Link Bacteriophages with Hosts
Paul Hyman
Viruses (2025) Vol. 17, Iss. 1, pp. 65-65
Open Access | Times Cited: 1
VITAP: a high precision tool for DNA and RNA viral classification based on meta-omic data
Kaiyang Zheng, Jianhua Sun, Yantao Liang, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access | Times Cited: 1
Genomes of six viruses that infect Asgard archaea from deep-sea sediments
Ian M. Rambo, Marguerite V. Langwig, Pedro Leão, et al.
Nature Microbiology (2022) Vol. 7, Iss. 7, pp. 953-961
Open Access | Times Cited: 32
Symbiotic virus-bacteria interactions in biological treatment of coking wastewater manipulating bacterial physiological activities
Shuang Zhu, Zhi-Jie Tan, Ziyu Guo, et al.
Water Research (2024) Vol. 257, pp. 121741-121741
Closed Access | Times Cited: 8
Predicting the hosts of prokaryotic viruses using GCN-based semi-supervised learning
Jiayu Shang, Yanni Sun
BMC Biology (2021) Vol. 19, Iss. 1
Open Access | Times Cited: 35
Computational Tools for the Analysis of Uncultivated Phage Genomes
Juan S. Andrade-Martínez, Laura Carolina Camelo Valera, Luis Alberto Chica Cárdenas, et al.
Microbiology and Molecular Biology Reviews (2022) Vol. 86, Iss. 2
Open Access | Times Cited: 24
Global diversity and biogeography of DNA viral communities in activated sludge systems
Xiangyu Fan, Mengzhi Ji, Da‐Shuai Mu, et al.
Microbiome (2023) Vol. 11, Iss. 1
Open Access | Times Cited: 16
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