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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

pystablemotifs: Python library for attractor identification and control in Boolean networks
Jordan C. Rozum, Dávid Deritei, Kyu Hyong Park, et al.
Bioinformatics (2021) Vol. 38, Iss. 5, pp. 1465-1466
Open Access | Times Cited: 49

Showing 1-25 of 49 citing articles:

Challenges and opportunities for digital twins in precision medicine from a complex systems perspective
Manlio De Domenico, Luca Allegri, Guido Caldarelli, et al.
npj Digital Medicine (2025) Vol. 8, Iss. 1
Open Access | Times Cited: 1
AEON.py: Python library for attractor analysis in asynchronous Boolean networks
Nikola Beneš, Luboš Brim, Ondřej Huvar, et al.
Bioinformatics (2022) Vol. 38, Iss. 21, pp. 4978-4980
Closed Access | Times Cited: 19
Difficult control is related to instability in biologically inspired Boolean networks
Bryan C. Daniels, Enrico Borriello
PLOS complex systems. (2025) Vol. 2, Iss. 1, pp. e0000025-e0000025
Open Access
Boolean modelling in plant biology
Aravind Karanam, Wouter‐Jan Rappel
Quantitative Plant Biology (2022) Vol. 3
Open Access | Times Cited: 14
Boolean Networks as Predictive Models of Emergent Biological Behaviors
Jordan C. Rozum, Colin Campbell, Eli Newby, et al.
(2024)
Open Access | Times Cited: 2
Marker and source-marker reprogramming of Most Permissive Boolean networks and ensembles with BoNesis
Loïc Paulevé
Peer Community Journal (2023) Vol. 3
Open Access | Times Cited: 6
Attractor separation and signed cycles in asynchronous Boolean networks
Adrien Richard, Elisa Tonello
Theoretical Computer Science (2023) Vol. 947, pp. 113706-113706
Open Access | Times Cited: 6
Repository of logically consistent real-world Boolean network models
Samuel Pastva, David Šafránek, Nikola Beneš, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 6
Predicting cascading extinctions and efficient restoration strategies in plant–pollinator networks via generalized positive feedback loops
Fatemeh Sadat Fatemi Nasrollahi, Colin Campbell, Réka Albert
Scientific Reports (2023) Vol. 13, Iss. 1
Open Access | Times Cited: 5
Computing attractors of large-scale asynchronous boolean networks using minimal trap spaces
Van-Giang Trinh, Kunihiko Hiraishi, Belaïd Benhamou
(2022), pp. 1-10
Open Access | Times Cited: 8
On Synchronization Design and State Observer Design of (Singular) Boolean Networks
Liangjie Sun, Wai‐Ki Ching, Shiyong Zhu, et al.
IEEE Transactions on Circuits and Systems I Regular Papers (2023) Vol. 70, Iss. 12, pp. 5456-5467
Closed Access | Times Cited: 4
A network-based modeling framework reveals the core signal transduction network underlying high carbon dioxide-induced stomatal closure in guard cells
Xiao Gan, Palanivelu Sengottaiyan, Kyu Hyong Park, et al.
PLoS Biology (2024) Vol. 22, Iss. 5, pp. e3002592-e3002592
Open Access | Times Cited: 1
HHIP's Dynamic Role in Epithelial Wound Healing Reveals a Potential Mechanism of COPD Susceptibility
Dávid Deritei, Wardatul Jannat Anamika, Xiaobo Zhou, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Global stabilizing control of large-scale biomolecular regulatory networks
Sugyun An, So‐Yeong Jang, Sang‐Min Park, et al.
Bioinformatics (2023) Vol. 39, Iss. 1
Open Access | Times Cited: 3
Structure-based approach to identify driver nodes in ensembles of biologically inspired Boolean networks
Eli Newby, Jorge Gómez Tejeda Zañudo, Réka Albert
Physical Review Research (2023) Vol. 5, Iss. 3
Open Access | Times Cited: 2
Pillars of biology: Boolean modeling of gene-regulatory networks
Juilee Thakar
Journal of Theoretical Biology (2023) Vol. 578, pp. 111682-111682
Closed Access | Times Cited: 2
Translocating proteins compartment-specifically alter the fate of epithelial-mesenchymal transition in a compartmentalized Boolean network model
Péter Mendik, Márk Kerestély, Sebestyén Kamp, et al.
npj Systems Biology and Applications (2022) Vol. 8, Iss. 1
Open Access | Times Cited: 4
Temporary and permanent control of partially specified Boolean networks
Luboš Brim, Samuel Pastva, David Šafránek, et al.
Biosystems (2022) Vol. 223, pp. 104795-104795
Closed Access | Times Cited: 4
Discrete-state models identify pathway specific B cell states across diseases and infections at single-cell resolution
George Kassis, Mukta G. Palshikar, Shannon P. Hilchey, et al.
Journal of Theoretical Biology (2024) Vol. 583, pp. 111769-111769
Open Access
Scalable Enumeration of Trap Spaces in Boolean Networks via Answer Set Programming
Van-Giang Trinh, Belaïd Benhamou, Samuel Pastva, et al.
Proceedings of the AAAI Conference on Artificial Intelligence (2024) Vol. 38, Iss. 9, pp. 10714-10722
Open Access
Computational Complexity of Minimal Trap Spaces in Boolean Networks
Kyungduk Moon, Kangbok Lee, Loïc Paulevé
SIAM Journal on Discrete Mathematics (2024) Vol. 38, Iss. 4, pp. 2691-2708
Open Access
Trap spaces of multi-valued networks: definition, computation, and applications
Van-Giang Trinh, Belaïd Benhamou, Thomas A. Henzinger, et al.
Bioinformatics (2023) Vol. 39, Iss. Supplement_1, pp. i513-i522
Open Access | Times Cited: 1
From Years to Hours: Accelerating Model Refinement
Kyu Hyong Park, Jordan C. Rozum, Réka Albert
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 1
Dauer fate in a Caenorhabditis elegans Boolean network model
Alekhya Kandoor, Janna L. Fierst
PeerJ (2023) Vol. 11, pp. e14713-e14713
Open Access
Peer Review #2 of "Dauer fate in a Caenorhabditis elegans Boolean network model (v0.1)"
D Sharma
(2023)
Open Access
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