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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

PST-PRNA: prediction of RNA-binding sites using protein surface topography and deep learning
Pengpai Li, Zhi–Ping Liu
Bioinformatics (2022) Vol. 38, Iss. 8, pp. 2162-2168
Open Access | Times Cited: 27

Showing 1-25 of 27 citing articles:

NesT-NABind: a Nested Transformer for Nucleic Acid-Binding Site Prediction on Protein Surface
Xinyue Ma, Fenglei Li, Qianyu Chen, et al.
Journal of Chemical Information and Modeling (2025)
Closed Access | Times Cited: 2
GeoBind: segmentation of nucleic acid binding interface on protein surface with geometric deep learning
Pengpai Li, Zhi–Ping Liu
Nucleic Acids Research (2023) Vol. 51, Iss. 10, pp. e60-e60
Open Access | Times Cited: 26
Structure-based prediction of protein-nucleic acid binding using graph neural networks
Jared M. Sagendorf, Raktim Mitra, Jiawei Huang, et al.
Biophysical Reviews (2024) Vol. 16, Iss. 3, pp. 297-314
Open Access | Times Cited: 10
An Encoding-Decoding Framework Based on CNN for circRNA-RBP Binding Sites Prediction
Yajing Guo, Xiujuan Lei, Yi Pan
Chinese Journal of Electronics (2024) Vol. 33, Iss. 1, pp. 256-263
Open Access | Times Cited: 9
Predicting RNA structures and functions by artificial intelligence
Jun Zhang, Mei Lang, Yaoqi Zhou, et al.
Trends in Genetics (2023) Vol. 40, Iss. 1, pp. 94-107
Closed Access | Times Cited: 19
Advances in Computational Methods for Protein–Protein Interaction Prediction
Lei Xian, Yansu Wang
Electronics (2024) Vol. 13, Iss. 6, pp. 1059-1059
Open Access | Times Cited: 7
HybridRNAbind: prediction of RNA interacting residues across structure-annotated and disorder-annotated proteins
Fuhao Zhang, Min Li, Jian Zhang, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. 5, pp. e25-e25
Open Access | Times Cited: 15
Predicting Small Molecule Binding Nucleotides in RNA Structures Using RNA Surface Topography
Jiaming Gao, Haoquan Liu, Zhuo Chen, et al.
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 18, pp. 6979-6992
Closed Access | Times Cited: 5
Structure-based prediction of nucleic acid binding residues by merging deep learning- and template-based approaches
Zheng Jiang, Yue-Yue Shen, Rong Liu
PLoS Computational Biology (2023) Vol. 19, Iss. 9, pp. e1011428-e1011428
Open Access | Times Cited: 11
Integrative structural analysis of NF45–NF90 heterodimers reveals architectural rearrangements and oligomerization on binding dsRNA
Sophie Winterbourne, Uma Jayachandran, Juan Zou, et al.
Nucleic Acids Research (2025) Vol. 53, Iss. 6
Open Access
TransBind allows precise detection of DNA-binding proteins and residues using language models and deep learning
Md Toki Tahmid, A.K.M. Mehedi Hasan, Md. Shamsuzzoha Bayzid
Communications Biology (2025) Vol. 8, Iss. 1
Open Access
Molecular surfaces modeling: Advancements in deep learning for molecular interactions and predictions
Renjie Xia, Wei Li, Yi Cheng, et al.
Biochemical and Biophysical Research Communications (2025), pp. 151799-151799
Closed Access
Computational tools to study RNA-protein complexes
Sneha Bheemireddy, Sankaran Sandhya, Narayanaswamy Srinivasan, et al.
Frontiers in Molecular Biosciences (2022) Vol. 9
Open Access | Times Cited: 12
Prediction of RNA-interacting residues in a protein using CNN and evolutionary profile
Sumeet Patiyal, Anjali Dhall, Khushboo Bajaj, et al.
Briefings in Bioinformatics (2022) Vol. 24, Iss. 1
Open Access | Times Cited: 12
pyRBDome: a comprehensive computational platform for enhancing RNA-binding proteome data
Liang‐Cui Chu, Niki Christopoulou, Hugh McCaughan, et al.
Life Science Alliance (2024) Vol. 7, Iss. 10, pp. e202402787-e202402787
Open Access | Times Cited: 2
Identifying the critical states and dynamic network biomarkers of cancers based on network entropy
Juntan Liu, Dandan Ding, Jiayuan Zhong, et al.
Journal of Translational Medicine (2022) Vol. 20, Iss. 1
Open Access | Times Cited: 10
ESM-NBR: fast and accurate nucleic acid-binding residue prediction via protein language model feature representation and multi-task learning
Wenwu Zeng, Dafeng Lv, Xuan Liu, et al.
2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (2023)
Closed Access | Times Cited: 5
计算生物学在RNA研究中的应用
Zhirong Chen, Junhong Huang, Bin Li, et al.
Scientia Sinica Vitae (2024)
Open Access | Times Cited: 1
Deep Learning Methods for Binding Site Prediction in Protein Structures
Elizaveta Geraseva
Biochemistry (Moscow) Supplement Series B Biomedical Chemistry (2024) Vol. 18, Iss. 2, pp. 103-117
Closed Access | Times Cited: 1
A convolutional network and attention mechanism-based approach to predict protein–RNA binding residues
Ke Li, Hongwei Wu, Zhenyu Yue, et al.
Computational Biology and Chemistry (2023) Vol. 105, pp. 107901-107901
Open Access | Times Cited: 1
Selection of aptamers using β-1,3-glucan recognition protein-tagged proteins and curdlan beads
Kazuyuki Kumagai, Hiroki Okubo, R. S. Amano, et al.
The Journal of Biochemistry (2023) Vol. 174, Iss. 5, pp. 433-440
Closed Access | Times Cited: 1
PNAbind: Structure-based prediction of protein-nucleic acid binding using graph neural networks
Jared M. Sagendorf, Raktim Mitra, Jiawei Huang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
A comprehensive review of protein-centric predictors for biomolecular interactions: from proteins to nucleic acids and beyond
Pengzhen Jia, Fuhao Zhang, Chaojin Wu, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 3
Open Access
Predicting Drug-Target Affinity Using Protein Pocket and Graph Convolution Network
Yunhai Li, Pengpai Li, Duanchen Sun, et al.
Lecture notes in computer science (2024), pp. 1-12
Closed Access
Integrative structural analysis of NF45-NF90 heterodimers reveals architectural rearrangements and oligomerisation on binding dsRNA.
Sophie Winterbourne, Uma Jayachandran, Juan Zou, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
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