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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

ODGI: understanding pangenome graphs
Andrea Guarracino, Simon Heumos, Sven Nahnsen, et al.
Bioinformatics (2022) Vol. 38, Iss. 13, pp. 3319-3326
Open Access | Times Cited: 97

Showing 1-25 of 97 citing articles:

A draft human pangenome reference
Wen‐Wei Liao, Mobin Asri, Jana Ebler, et al.
Nature (2023) Vol. 617, Iss. 7960, pp. 312-324
Open Access | Times Cited: 577
A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar
Erik Garrison, Zev Kronenberg, Eric T. Dawson, et al.
PLoS Computational Biology (2022) Vol. 18, Iss. 5, pp. e1009123-e1009123
Open Access | Times Cited: 165
Semi-automated assembly of high-quality diploid human reference genomes
Erich D. Jarvis, Giulio Formenti, Arang Rhie, et al.
Nature (2022) Vol. 611, Iss. 7936, pp. 519-531
Open Access | Times Cited: 140
Recombination between heterologous human acrocentric chromosomes
Andrea Guarracino, Silvia Buonaiuto, Leonardo Gomes de Lima, et al.
Nature (2023) Vol. 617, Iss. 7960, pp. 335-343
Open Access | Times Cited: 85
Building pangenome graphs
Erik Garrison, Andrea Guarracino, Simon Heumos, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 79
Variant calling and benchmarking in an era of complete human genome sequences
Nathan D. Olson, Justin Wagner, Nathan Dwarshuis, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 7, pp. 464-483
Closed Access | Times Cited: 77
Building pangenome graphs
Erik Garrison, Andrea Guarracino, Simon Heumos, et al.
Nature Methods (2024) Vol. 21, Iss. 11, pp. 2008-2012
Closed Access | Times Cited: 35
Nanopore sequencing of 1000 Genomes Project samples to build a comprehensive catalog of human genetic variation
Jonas A. Gustafson, Sophia B Gibson, Nikhita Damaraju, et al.
medRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 26
Leveraging a phased pangenome for haplotype design of hybrid potato
Lin Cheng, Nan Wang, Zhigui Bao, et al.
Nature (2025)
Open Access | Times Cited: 4
Pangenome graphs and their applications in biodiversity genomics
Simona Secomandi, Guido Roberto Gallo, Riccardo Rossi, et al.
Nature Genetics (2025)
Closed Access | Times Cited: 3
The role of pangenomics in orphan crop improvement
Haifei Hu, Junliang Zhao, William J. W. Thomas, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access | Times Cited: 2
Unbiased pangenome graphs
Erik Garrison, Andrea Guarracino
Bioinformatics (2022) Vol. 39, Iss. 1
Open Access | Times Cited: 51
Computational graph pangenomics: a tutorial on data structures and their applications
Jasmijn A. Baaijens, Paola Bonizzoni, Christina Boucher, et al.
Natural Computing (2022) Vol. 21, Iss. 1, pp. 81-108
Open Access | Times Cited: 39
A survey of mapping algorithms in the long-reads era
Kristoffer Sahlin, Thomas Baudeau, Bastien Cazaux, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 35
Graph construction method impacts variation representation and analyses in a bovine super-pangenome
Alexander S. Leonard, Danang Crysnanto, Xena Marie Mapel, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 28
Multiscale analysis of pangenomes enables improved representation of genomic diversity for repetitive and clinically relevant genes
Chen-Shan Chin, Sairam Behera, Asif Khalak, et al.
Nature Methods (2023) Vol. 20, Iss. 8, pp. 1213-1221
Open Access | Times Cited: 28
Recurrent evolution and selection shape structural diversity at the amylase locus
Davide Bolognini, Alma Halgren, Runyang Nicolas Lou, et al.
Nature (2024)
Open Access | Times Cited: 12
Repeated plague infections across six generations of Neolithic Farmers
Frederik Valeur Seersholm, Karl-Göran Sjögren, Julia Koelman, et al.
Nature (2024) Vol. 632, Iss. 8023, pp. 114-121
Open Access | Times Cited: 9
Technological Development and Advances for Constructing and Analyzing Plant Pangenomes
Haifei Hu, Risheng Li, Junliang Zhao, et al.
Genome Biology and Evolution (2024) Vol. 16, Iss. 4
Open Access | Times Cited: 8
A Hitchhiker's Guide to long-read genomic analysis
Medhat Mahmoud, Daniel Paiva Agustinho, Fritz J. Sedlazeck
Genome Research (2025) Vol. 35, Iss. 4, pp. 545-558
Closed Access | Times Cited: 1
Comparing methods for constructing and representing human pangenome graphs
Francesco Andreace, P Lechat, Yoann Dufresne, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 22
A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants
Edward S. Rice, Antton Alberdi, James M. Alfieri, et al.
BMC Biology (2023) Vol. 21, Iss. 1
Open Access | Times Cited: 18
Genome Evolution and the Future of Phylogenomics of Non-Avian Reptiles
Daren C. Card, W. Bryan Jennings, Scott V. Edwards
Animals (2023) Vol. 13, Iss. 3, pp. 471-471
Open Access | Times Cited: 17
Structural variation in the pangenome of wild and domesticated barley
Murukarthick Jayakodi, Qiongxian Lu, Hélène Pidon, et al.
Nature (2024) Vol. 636, Iss. 8043, pp. 654-662
Open Access | Times Cited: 8
Beyond the Human Genome Project: The Age of Complete Human Genome Sequences and Pangenome References
Dylan J. Taylor, Jordan M. Eizenga, Qiuhui Li, et al.
Annual Review of Genomics and Human Genetics (2024) Vol. 25, Iss. 1, pp. 77-104
Open Access | Times Cited: 7
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