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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS
Katharina J. Hoff, Simone Lange, Alexandre Lomsadze, et al.
Bioinformatics (2015) Vol. 32, Iss. 5, pp. 767-769
Open Access | Times Cited: 1092

Showing 1-25 of 1092 citing articles:

BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database
Tomáš Brůna, Katharina J. Hoff, Alexandre Lomsadze, et al.
NAR Genomics and Bioinformatics (2021) Vol. 3, Iss. 1
Open Access | Times Cited: 1342
Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome
John L. Bowman, Takayuki Kohchi, Katsuyuki T. Yamato, et al.
Cell (2017) Vol. 171, Iss. 2, pp. 287-304.e15
Open Access | Times Cited: 1092
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
Shujun Ou, Weija Su, Yi Liao, et al.
Genome biology (2019) Vol. 20, Iss. 1
Open Access | Times Cited: 946
Whole-Genome Annotation with BRAKER
Katharina J. Hoff, Alexandre Lomsadze, Mark Borodovsky, et al.
Methods in molecular biology (2019), pp. 65-95
Open Access | Times Cited: 684
Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome
Derek M. Bickhart, Benjamin D. Rosen, Sergey Koren, et al.
Nature Genetics (2017) Vol. 49, Iss. 4, pp. 643-650
Open Access | Times Cited: 594
GeneMark-EP+: eukaryotic gene prediction with self-training in the space of genes and proteins
Tomáš Brůna, Alexandre Lomsadze, Mark Borodovsky
NAR Genomics and Bioinformatics (2020) Vol. 2, Iss. 2
Open Access | Times Cited: 418
Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species
José F. Muñoz, Lalitha Gade, Nancy A. Chow, et al.
Nature Communications (2018) Vol. 9, Iss. 1
Open Access | Times Cited: 378
A Species-Wide Inventory of NLR Genes and Alleles in Arabidopsis thaliana
Anna-Lena Van de Weyer, Freddy Monteiro, Oliver J. Furzer, et al.
Cell (2019) Vol. 178, Iss. 5, pp. 1260-1272.e14
Open Access | Times Cited: 333
GeMoMa: Homology-Based Gene Prediction Utilizing Intron Position Conservation and RNA-seq Data
Jens Keilwagen, Frank Hartung, Jan Grau
Methods in molecular biology (2019), pp. 161-177
Closed Access | Times Cited: 320
Six reference-quality genomes reveal evolution of bat adaptations
David Jebb, Zixia Huang, Martin Pippel, et al.
Nature (2020) Vol. 583, Iss. 7817, pp. 578-584
Open Access | Times Cited: 299
Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts
Fay‐Wei Li, Tomoaki Nishiyama, Manuel Waller, et al.
Nature Plants (2020) Vol. 6, Iss. 3, pp. 259-272
Open Access | Times Cited: 298
The genome of cowpea (Vigna unguiculata [L.] Walp.)
Stefano Lonardi, María Muñoz‐Amatriaín, Qihua Liang, et al.
The Plant Journal (2019) Vol. 98, Iss. 5, pp. 767-782
Open Access | Times Cited: 296
Combining RNA-seq data and homology-based gene prediction for plants, animals and fungi
Jens Keilwagen, Frank Hartung, Michael Paulini, et al.
BMC Bioinformatics (2018) Vol. 19, Iss. 1
Open Access | Times Cited: 265
The genome sequence of sweet cherry (Prunus avium) for use in genomics-assisted breeding
Kenta Shirasawa, Kanji Isuzugawa, Mitsunobu Ikenaga, et al.
DNA Research (2017) Vol. 24, Iss. 5, pp. 499-508
Open Access | Times Cited: 256
Genome evolution and diversity of wild and cultivated potatoes
Dié Tang, Yuxin Jia, Jinzhe Zhang, et al.
Nature (2022) Vol. 606, Iss. 7914, pp. 535-541
Open Access | Times Cited: 242
A chromosome-level genome of the spider Trichonephila antipodiana reveals the genetic basis of its polyphagy and evidence of an ancient whole-genome duplication event
Zheng Fan, Tao Yuan, Piao Liu, et al.
GigaScience (2021) Vol. 10, Iss. 3
Open Access | Times Cited: 228
Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses
Robin van Velzen, Rens Holmer, Fengjiao Bu, et al.
Proceedings of the National Academy of Sciences (2018) Vol. 115, Iss. 20
Open Access | Times Cited: 216
Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus
Yuki Yoshida, Georgios Koutsovoulos, Dominik R. Laetsch, et al.
PLoS Biology (2017) Vol. 15, Iss. 7, pp. e2002266-e2002266
Open Access | Times Cited: 210
MetaEuk—sensitive, high-throughput gene discovery, and annotation for large-scale eukaryotic metagenomics
Eli Levy Karin, Milot Mirdita, Johannes Söding
Microbiome (2020) Vol. 8, Iss. 1
Open Access | Times Cited: 204
TSEBRA: transcript selector for BRAKER
Lars Gabriel, Katharina J. Hoff, Tomáš Brůna, et al.
BMC Bioinformatics (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 188
Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome
Clémence Plissonneau, Fanny E. Hartmann, Daniel Croll
BMC Biology (2018) Vol. 16, Iss. 1
Open Access | Times Cited: 175
Contrasting signatures of genomic divergence during sympatric speciation
Andreas F. Kautt, Claudius F. Kratochwil, Alexander Nater, et al.
Nature (2020) Vol. 588, Iss. 7836, pp. 106-111
Open Access | Times Cited: 168
Insights into the Evolution of Multicellularity from the Sea Lettuce Genome
Olivier De Clerck, Shu-Min Kao, Kenny A. Bogaert, et al.
Current Biology (2018) Vol. 28, Iss. 18, pp. 2921-2933.e5
Open Access | Times Cited: 166
Population genomics of the critically endangered kākāpō
Nicolás Dussex, Tom van der Valk, Hernán E. Morales, et al.
Cell Genomics (2021) Vol. 1, Iss. 1, pp. 100002-100002
Open Access | Times Cited: 165
Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution
Shu‐Miaw Chaw, Yu-Ching Liu, Yu‐Wei Wu, et al.
Nature Plants (2019) Vol. 5, Iss. 1, pp. 63-73
Open Access | Times Cited: 163
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