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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

The Gene Expression Deconvolution Interactive Tool (GEDIT): accurate cell type quantification from gene expression data
Brian B. Nadel, David López, Dennis Montoya, et al.
GigaScience (2021) Vol. 10, Iss. 2
Open Access | Times Cited: 44

Showing 1-25 of 44 citing articles:

Cell type–specific genetic regulation of gene expression across human tissues
Sarah Kim-Hellmuth, François Aguet, Meritxell Oliva, et al.
Science (2020) Vol. 369, Iss. 6509
Open Access | Times Cited: 486
Precise reconstruction of the TME using bulk RNA-seq and a machine learning algorithm trained on artificial transcriptomes
Aleksandr Zaitsev, Maksim Chelushkin, Daniiar Dyikanov, et al.
Cancer Cell (2022) Vol. 40, Iss. 8, pp. 879-894.e16
Open Access | Times Cited: 86
Challenges and perspectives in computational deconvolution of genomics data
Lana X. Garmire, Yijun Li, Qianhui Huang, et al.
Nature Methods (2024) Vol. 21, Iss. 3, pp. 391-400
Open Access | Times Cited: 20
Demystifying emerging bulk RNA-Seq applications: the application and utility of bioinformatic methodology
Amarinder Singh Thind, Isha Monga, Prasoon Kumar Thakur, et al.
Briefings in Bioinformatics (2021) Vol. 22, Iss. 6
Open Access | Times Cited: 74
Macrophage-derived CXCL9 and CXCL11, T-cell skin homing, and disease control in mogamulizumab-treated CTCL patients
Adèle de Masson, Delphine Darbord, Gábor Dobos, et al.
Blood (2021) Vol. 139, Iss. 12, pp. 1820-1832
Open Access | Times Cited: 50
Spatial Transcriptomic Profiling of Tetraspanins in Stage 4 Colon Cancer from Primary Tumor and Liver Metastasis
Thanawat Suwatthanarak, Kullanist Thanormjit, Tharathorn Suwatthanarak, et al.
Life (2024) Vol. 14, Iss. 1, pp. 126-126
Open Access | Times Cited: 6
Human Milk Oligosaccharides Impact Cellular and Inflammatory Gene Expression and Immune Response
Fernanda Rosa, Ashok Sharma, Manoj Gurung, et al.
Frontiers in Immunology (2022) Vol. 13
Open Access | Times Cited: 23
The Molecular Signature of Neuropathic Pain in a Human Model System
Oliver Sandy-Hindmarch, Pao-Sheng Chang, Paulina S. Scheuren, et al.
medRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 4
Transcriptomic landscape around wound bed defines regenerative versus non-regenerative outcomes in mouse digit amputation
Archana Prabahar, Connie S. Chamberlain, Ray Vanderby, et al.
PLoS Computational Biology (2025) Vol. 21, Iss. 4, pp. e1012997-e1012997
Open Access
Comprehensive evaluation of methods for identifying tissues or cell types of origin of the plasma cell-free transcriptome
Tingyu Yang, Yulong Qin, Shuo Yan, et al.
PeerJ (2025) Vol. 13, pp. e19241-e19241
Open Access
Robust and accurate estimation of cellular fraction from tissue omics data via ensemble deconvolution
Manqi Cai, Molin Yue, Tianmeng Chen, et al.
Bioinformatics (2022) Vol. 38, Iss. 11, pp. 3004-3010
Open Access | Times Cited: 18
Integrated analysis of an in vivo model of intra-nasal exposure to instilled air pollutants reveals cell-type specific responses in the placenta
Anela Tosevska, Shubhamoy Ghosh, Amit Ganguly, et al.
Scientific Reports (2022) Vol. 12, Iss. 1
Open Access | Times Cited: 17
The local molecular signature of human peripheral neuropathic pain
Oliver Sandy-Hindmarch, Pao-Sheng Chang, Paulina S. Scheuren, et al.
Pain (2024)
Open Access | Times Cited: 3
Rigorous benchmarking of T-cell receptor repertoire profiling methods for cancer RNA sequencing
Kerui Peng, Theodore S. Nowicki, Katie M. Campbell, et al.
Briefings in Bioinformatics (2023) Vol. 24, Iss. 4
Open Access | Times Cited: 9
Systematic evaluation of transcriptomics-based deconvolution methods and references using thousands of clinical samples
Brian B. Nadel, Meritxell Oliva, Benjamin L. Shou, et al.
Briefings in Bioinformatics (2021) Vol. 22, Iss. 6
Open Access | Times Cited: 19
Transcriptomic Analysis of Early‐Stage Basal Cell Carcinomas in Murine Skin Following Topical Treatments With Ablative Fractional Laser and Vismodegib
Kristian Kåber Pedersen, Merete Hædersdal, Uffe H. Olesen, et al.
Experimental Dermatology (2024) Vol. 33, Iss. 10
Open Access | Times Cited: 2
DNA methylation profiles in pneumonia patients reflect changes in cell types and pneumonia severity
Marco Morselli, Colin Farrell, Dennis Montoya, et al.
Epigenetics (2022) Vol. 17, Iss. 12, pp. 1646-1660
Open Access | Times Cited: 11
Rejection of Lepeophtheirus salmonis driven in part by chitin sensing is not impacted by seawater acclimitization in Coho salmon (Oncorhynchus kisutch)
Laura M. Braden, Dylan Michaud, David B. Groman, et al.
Scientific Reports (2023) Vol. 13, Iss. 1
Open Access | Times Cited: 6
Whole blood transcriptomics identifies subclasses of pediatric septic shock
Jamie O. Yang, Matt S. Zinter, Matteo Pellegrini, et al.
Critical Care (2023) Vol. 27, Iss. 1
Open Access | Times Cited: 5
Evaluation of noninvasive biospecimens for transcriptome studies
Molly Martorella, Silva Kasela, Renee Garcia-Flores, et al.
BMC Genomics (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 4
Mendelian randomization reveals interactions of the blood proteome and immunome in mitral valve prolapse
Louis-Hippolyte Minvielle Moncla, Mewen Briend, Mame Sokhna Sylla, et al.
Communications Medicine (2024) Vol. 4, Iss. 1
Open Access | Times Cited: 1
Epithelial Membrane Protein 2 (EMP2) Blockade Attenuates Pathological Neovascularization in Murine Oxygen-Induced Retinopathy
Brian Aguirre, Meng‐Chin Lin, Eduardo Araujo, et al.
Investigative Ophthalmology & Visual Science (2024) Vol. 65, Iss. 8, pp. 10-10
Open Access | Times Cited: 1
Cell-Free RNA as a Novel Biomarker for Response to Therapy in Head & Neck Cancer
Anela Tosevska, Marco Morselli, Saroj K. Basak, et al.
Frontiers in Oncology (2022) Vol. 12
Open Access | Times Cited: 7
Defining the Molecular Landscape of Cancer-Associated Stroma in Cutaneous Squamous Cell Carcinoma
Erin Beebe, Zahra Motamed, Lennart Opitz, et al.
Journal of Investigative Dermatology (2022) Vol. 142, Iss. 12, pp. 3304-3312.e5
Open Access | Times Cited: 7
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