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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes
Lisa K. Johnson, Harriet Alexander, C. Titus Brown
GigaScience (2018) Vol. 8, Iss. 4
Open Access | Times Cited: 86

Showing 1-25 of 86 citing articles:

MetaEuk—sensitive, high-throughput gene discovery, and annotation for large-scale eukaryotic metagenomics
Eli Levy Karin, Milot Mirdita, Johannes Söding
Microbiome (2020) Vol. 8, Iss. 1
Open Access | Times Cited: 204
PhycoCosm, a comparative algal genomics resource
Igor V. Grigoriev, Richard D. Hayes, Sara Calhoun, et al.
Nucleic Acids Research (2020) Vol. 49, Iss. D1, pp. D1004-D1011
Open Access | Times Cited: 151
Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean
Tom O. Delmont, Morgan Gaïa, Damien Daniel Hinsinger, et al.
Cell Genomics (2022) Vol. 2, Iss. 5, pp. 100123-100123
Open Access | Times Cited: 137
Phytochrome evolution in 3D: deletion, duplication, and diversification
Nathan C. Rockwell, J. Clark Lagarias
New Phytologist (2019) Vol. 225, Iss. 6, pp. 2283-2300
Open Access | Times Cited: 98
Dinoflagellates alter their carbon and nutrient metabolic strategies across environmental gradients in the central Pacific Ocean
Natalie R. Cohen, Matthew R. McIlvin, Dawn M. Moran, et al.
Nature Microbiology (2021) Vol. 6, Iss. 2, pp. 173-186
Closed Access | Times Cited: 91
Dinoflagellates with relic endosymbiont nuclei as models for elucidating organellogenesis
Chihiro Sarai, Goro Tanifuji, Takuro Nakayama, et al.
Proceedings of the National Academy of Sciences (2020) Vol. 117, Iss. 10, pp. 5364-5375
Open Access | Times Cited: 82
Feeding diverse prey as an excellent strategy of mixotrophic dinoflagellates for global dominance
Hae Jin Jeong, Hee Chang Kang, An Suk Lim, et al.
Science Advances (2021) Vol. 7, Iss. 2
Open Access | Times Cited: 73
The dynamic trophic architecture of open-ocean protist communities revealed through machine-guided metatranscriptomics
Bennett Lambert, Ryan D. Groussman, Megan J. Schatz, et al.
Proceedings of the National Academy of Sciences (2022) Vol. 119, Iss. 7
Open Access | Times Cited: 45
Streamlining data-intensive biology with workflow systems
Taylor Reiter, Phillip Brooks, Luiz Irber, et al.
GigaScience (2021) Vol. 10, Iss. 1
Open Access | Times Cited: 41
TRAPID 2.0: a web application for taxonomic and functional analysis of de novo transcriptomes
François Bucchini, Andrea Del Cortona, Łukasz Kreft, et al.
Nucleic Acids Research (2021) Vol. 49, Iss. 17, pp. e101-e101
Open Access | Times Cited: 41
The Osmolyte Ties That Bind: Genomic Insights Into Synthesis and Breakdown of Organic Osmolytes in Marine Microbes
Erin L. McParland, Harriet Alexander, Winifred M. Johnson
Frontiers in Marine Science (2021) Vol. 8
Open Access | Times Cited: 41
Proton-transporting heliorhodopsins from marine giant viruses
Shoko Hososhima, Ritsu Mizutori, Rei Abe‐Yoshizumi, et al.
eLife (2022) Vol. 11
Open Access | Times Cited: 31
Multi-omics analysis reveals the molecular response to heat stress in a “red tide” dinoflagellate
Katherine E. Dougan, Zhi-Luo Deng, Lars Wöhlbrand, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 19
Revealing RNA virus diversity and evolution in unicellular algae transcriptomes
Justine Charon, Shauna A. Murray, Edward C. Holmes
Virus Evolution (2021) Vol. 7, Iss. 2
Open Access | Times Cited: 37
Iron metabolism strategies in diatoms
Xia Gao, Chris Bowler, Elena Kazamia
Journal of Experimental Botany (2021) Vol. 72, Iss. 6, pp. 2165-2180
Open Access | Times Cited: 36
Experimental identification and in silico prediction of bacterivory in green algae
Nicholas Bock, Sophie Charvet, John A. Burns, et al.
The ISME Journal (2021) Vol. 15, Iss. 7, pp. 1987-2000
Open Access | Times Cited: 35
Eukaryotic genomes from a global metagenomic dataset illuminate trophic modes and biogeography of ocean plankton
Harriet Alexander, Sarah K. Hu, Arianna I. Krinos, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Closed Access | Times Cited: 33
Reduced H+channel activity disrupts pH homeostasis and calcification in coccolithophores at low ocean pH
Dorothee Kottmeier, Abdesslam Chrachri, Gerald Langer, et al.
Proceedings of the National Academy of Sciences (2022) Vol. 119, Iss. 19
Open Access | Times Cited: 28
Massive genome reduction predates the divergence of Symbiodiniaceae dinoflagellates
Sarah Shah, Katherine E. Dougan, Yibi Chen, et al.
The ISME Journal (2024) Vol. 18, Iss. 1
Open Access | Times Cited: 5
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
Arianna I. Krinos, Sarah K. Hu, Natalie R. Cohen, et al.
The Journal of Open Source Software (2021) Vol. 6, Iss. 57, pp. 2817-2817
Open Access | Times Cited: 31
Genome evolution of a nonparasitic secondary heterotroph, the diatomNitzschia putrida
Ryoma Kamikawa, Takako Mochizuki, Mika Sakamoto, et al.
Science Advances (2022) Vol. 8, Iss. 17
Open Access | Times Cited: 19
Multiple parallel origins of parasitic Marine Alveolates
Corey C. Holt, Elisabeth Hehenberger, Denis V. Tikhonenkov, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 12
Microeukaryote metabolism across the western North Atlantic Ocean revealed through autonomous underwater profiling
Natalie R. Cohen, Arianna I. Krinos, Riss M. Kellogg, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 4
A multifunctional organelle coordinates phagocytosis and chlorophagy in a marine eukaryote phytoplankton Scyphosphaera apsteinii
Julie A. Koester, Oren E Fox, Elizabeth Smith, et al.
New Phytologist (2025)
Open Access
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