Open Access Helper

OpenAlex Citation Counts

OpenAlex Citations Logo

OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

ANANSE: an enhancer network-based computational approach for predicting key transcription factors in cell fate determination
Quan Xu, Γεώργιος Γεωργίου, Siebren Frölich, et al.
Nucleic Acids Research (2021) Vol. 49, Iss. 14, pp. 7966-7985
Open Access | Times Cited: 61

Showing 1-25 of 61 citing articles:

Gene regulatory network inference in the era of single-cell multi-omics
Pau Badia-i-Mompel, Lorna Wessels, Sophia Müller‐Dott, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 11, pp. 739-754
Closed Access | Times Cited: 187
Transcription factors: Bridge between cell signaling and gene regulation
Paula Weidemüller, Maksim Kholmatov, Evangelia Petsalaki, et al.
PROTEOMICS (2021) Vol. 21, Iss. 23-24
Open Access | Times Cited: 166
Epigenome editing technologies for discovery and medicine
Sean R. McCutcheon, Dahlia Rohm, Nahid Iglesias, et al.
Nature Biotechnology (2024) Vol. 42, Iss. 8, pp. 1199-1217
Closed Access | Times Cited: 18
GRaNIE and GRaNPA : inference and evaluation of enhancer‐mediated gene regulatory networks
Aryan Kamal, Christian Arnold, Annique Claringbould, et al.
Molecular Systems Biology (2023) Vol. 19, Iss. 6
Open Access | Times Cited: 41
Analysis of the P. lividus sea urchin genome highlights contrasting trends of genomic and regulatory evolution in deuterostomes
Ferdinand Marlétaz, Arnaud Couloux, Julie Poulain, et al.
Cell Genomics (2023) Vol. 3, Iss. 4, pp. 100295-100295
Open Access | Times Cited: 34
The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks
Marouen Ben Guebila, Tian Wang, Camila M. Lopes‐Ramos, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 23
Distinct epicardial gene regulatory programs drive development and regeneration of the zebrafish heart
Michael Weinberger, Filipa C. Simões, Trishalee Gungoosingh, et al.
Developmental Cell (2024) Vol. 59, Iss. 3, pp. 351-367.e6
Open Access | Times Cited: 14
Multiomic profiling of transcription factor binding and function in human brain
Jacob M. Loupe, Ashlyn G. Anderson, Lindsay F. Rizzardi, et al.
Nature Neuroscience (2024) Vol. 27, Iss. 7, pp. 1387-1399
Closed Access | Times Cited: 9
Detection of new pioneer transcription factors as cell-type-specific nucleosome binders
Yunhui Peng, Wei Song, Vladimir B. Teif, et al.
eLife (2024) Vol. 12
Open Access | Times Cited: 7
KnockTF 2.0: a comprehensive gene expression profile database with knockdown/knockout of transcription (co-)factors in multiple species
Chenchen Feng, Chao Song, Shuang Song, et al.
Nucleic Acids Research (2023) Vol. 52, Iss. D1, pp. D183-D193
Open Access | Times Cited: 13
Deciphering lineage specification during early embryogenesis in mouse gastruloids using multilayered proteomics
Suzan Stelloo, Maria Teresa Alejo-Vinogradova, Charlotte A. G. H. van Gelder, et al.
Cell stem cell (2024) Vol. 31, Iss. 7, pp. 1072-1090.e8
Open Access | Times Cited: 5
Implementing Computational Modeling in Tissue Engineering: Where Disciplines Meet
Janine N. Post, Sandra Loerakker, Roeland M. H. Merks, et al.
Tissue Engineering Part A (2022) Vol. 28, Iss. 11-12, pp. 542-554
Open Access | Times Cited: 19
Identification of the regulatory circuit governing corneal epithelial fate determination and disease
Jos G.A. Smits, Dulce Lima Cunha, Maryam Amini, et al.
PLoS Biology (2023) Vol. 21, Iss. 10, pp. e3002336-e3002336
Open Access | Times Cited: 12
scGRN: a comprehensive single-cell gene regulatory network platform of human and mouse
Xuemei Huang, Chao Song, Guorui Zhang, et al.
Nucleic Acids Research (2023) Vol. 52, Iss. D1, pp. D293-D303
Open Access | Times Cited: 12
A mechanism-informed deep neural network enables prioritization of regulators that drive cell state transitions
Xi Xi, Jiaqi Li, Jinmeng Jia, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Deciphering driver regulators of cell fate decisions from single-cell transcriptomics data with CEFCON
Peizhuo Wang, Wen Xiao, Han Li, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 10
Detection of new pioneer transcription factors as cell-type-specific nucleosome binders
Yunhui Peng, Wei Song, Vladimir B. Teif, et al.
eLife (2023) Vol. 12
Open Access | Times Cited: 9
A single-cell multimodal view on gene regulatory network inference from transcriptomics and chromatin accessibility data
Jens Uwe Loers, Vanessa Vermeirssen
Briefings in Bioinformatics (2024) Vol. 25, Iss. 5
Open Access | Times Cited: 3
ONECUT2 regulates RANKL-dependent enterocyte and microfold cell differentiation in the small intestine; a multi-omics study
Maria Velez, Hannah K. Neikes, Rebecca R. Snabel, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. 3, pp. 1277-1296
Open Access | Times Cited: 8
scREMOTE: Using multimodal single cell data to predict regulatory gene relationships and to build a computational cell reprogramming model
Andy Tran, Pengyi Yang, Jean Yang, et al.
NAR Genomics and Bioinformatics (2022) Vol. 4, Iss. 1
Open Access | Times Cited: 13
Identification of transcription factors dictating blood cell development using a bidirectional transcription network-based computational framework
Branco M. H. Heuts, Saioa Arza-Apalategi, Siebren Frölich, et al.
Scientific Reports (2022) Vol. 12, Iss. 1
Open Access | Times Cited: 13
Computational approaches to understand transcription regulation in development
Maarten van der Sande, Siebren Frölich, Simon J. van Heeringen
Biochemical Society Transactions (2023) Vol. 51, Iss. 1, pp. 1-12
Open Access | Times Cited: 7
NETISCE: a network-based tool for cell fate reprogramming
Lauren Marazzi, Milan Shah, Shreedula Balakrishnan, et al.
npj Systems Biology and Applications (2022) Vol. 8, Iss. 1
Open Access | Times Cited: 12
Integrative analysis of chromatin accessibility and transcriptome landscapes in the induction of peritoneal fibrosis by high glucose
Qiong Song, Pengbo Wang, Huan Wang, et al.
Journal of Translational Medicine (2024) Vol. 22, Iss. 1
Open Access | Times Cited: 2
The transcription factor ZNF469 regulates collagen production in liver fibrosis
Sebastian Steinhauser, David Estoppey, Dennis P Buehler, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Page 1 - Next Page

Scroll to top