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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

eggNOG 6.0: enabling comparative genomics across 12 535 organisms
Ana Hernández-Plaza, Damian Szklarczyk, Jorge Botas, et al.
Nucleic Acids Research (2022) Vol. 51, Iss. D1, pp. D389-D394
Open Access | Times Cited: 154

Showing 1-25 of 154 citing articles:

EasyMetagenome: A user‐friendly and flexible pipeline for shotgun metagenomic analysis in microbiome research
Defeng Bai, Tong Chen, Jiani Xun, et al.
iMeta (2025)
Open Access | Times Cited: 4
Factors Determining the Susceptibility of Fish to Effects of Human Pharmaceuticals
Chrisna Matthee, A. Ross Brown, Anke Lange, et al.
Environmental Science & Technology (2023) Vol. 57, Iss. 24, pp. 8845-8862
Open Access | Times Cited: 36
SPIRE: a Searchable, Planetary-scale mIcrobiome REsource
Thomas Schmidt, Anthony Fullam, Pamela Ferretti, et al.
Nucleic Acids Research (2023) Vol. 52, Iss. D1, pp. D777-D783
Open Access | Times Cited: 28
The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection
Daniel J. Rigden, Xosé M. Fernández
Nucleic Acids Research (2023) Vol. 51, Iss. D1, pp. D1-D8
Open Access | Times Cited: 24
VOGDB—Database of Virus Orthologous Groups
Lovro Trgovec-Greif, Hans-Jörg Hellinger, Jean Mainguy, et al.
Viruses (2024) Vol. 16, Iss. 8, pp. 1191-1191
Open Access | Times Cited: 13
Gut microbiota strain richness is species specific and affects engraftment
Alice Chen-Liaw, Varun Aggarwala, Ilaria Mogno, et al.
Nature (2024)
Closed Access | Times Cited: 13
BGCFlow: systematic pangenome workflow for the analysis of biosynthetic gene clusters across large genomic datasets
Matin Nuhamunada, Omkar S. Mohite, Patrick V. Phaneuf, et al.
Nucleic Acids Research (2024) Vol. 52, Iss. 10, pp. 5478-5495
Open Access | Times Cited: 11
First report on comprehensive genomic analysis of a multidrug-resistant Enterobacter asburiae isolated from diabetic foot infection from Bangladesh
M. Rafiul Islam, Spencer Mark Mondol, Md Hossen, et al.
Scientific Reports (2025) Vol. 15, Iss. 1
Open Access | Times Cited: 1
PhyloFunc: phylogeny-informed functional distance as a new ecological metric for metaproteomic data analysis
Luman Wang, Caitlin M. A. Simopoulos, Joeselle M. Serrana, et al.
Microbiome (2025) Vol. 13, Iss. 1
Open Access | Times Cited: 1
Well-hidden methanogenesis in deep, organic-rich sediments of Guaymas Basin
Diana P. Bojanova, Valerie Y De Anda, Mojhgan Haghnegahdar, et al.
The ISME Journal (2023) Vol. 17, Iss. 11, pp. 1828-1838
Open Access | Times Cited: 18
A fast comparative genome browser for diverse bacteria and archaea
Morgan N. Price, Adam P. Arkin
PLoS ONE (2024) Vol. 19, Iss. 4, pp. e0301871-e0301871
Open Access | Times Cited: 8
Shaping up genomes: Prokaryotic roots and eukaryotic diversification of SMC complexes
Jolien J. E. van Hooff, Maximilian W. D. Raas, Eelco C. Tromer, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 7
MetaCerberus: distributed highly parallelized HMM-based processing for robust functional annotation across the tree of life
Jose L. Figueroa, Eliza Dhungel, Madeline Bellanger, et al.
Bioinformatics (2024) Vol. 40, Iss. 3
Open Access | Times Cited: 7
The TSC22D, WNK, and NRBP gene families exhibit functional buffering and evolved with Metazoa for cell volume regulation
Yu-Xi Xiao, Seon Yong Lee, Magali Aguilera-Uribe, et al.
Cell Reports (2024) Vol. 43, Iss. 7, pp. 114417-114417
Open Access | Times Cited: 7
COG database update 2024
Michael Y. Galperin, Roberto Vera Alvarez, Svetlana Karamycheva, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D356-D363
Open Access | Times Cited: 7
DAVID ortholog: An integrative tool to enhance functional analysis through orthologs
Brad T. Sherman, Ganesh Panzade, Tomozumi Imamichi, et al.
Bioinformatics (2024) Vol. 40, Iss. 10
Open Access | Times Cited: 6
FAM171B stabilizes vimentin and enhances CCL2-mediated TAM infiltration to promote bladder cancer progression
Weimin Hu, Ming Li, Jinzhuo Ning, et al.
Journal of Experimental & Clinical Cancer Research (2023) Vol. 42, Iss. 1
Open Access | Times Cited: 14
Genomic landscape of NDM-1 producing multidrug-resistant Providencia stuartii causing burn wound infections in Bangladesh
Spencer Mark Mondol, Israt Islam, M. Rafiul Islam, et al.
Scientific Reports (2024) Vol. 14, Iss. 1
Open Access | Times Cited: 5
Haplotype-based pangenomes reveal genetic variations and climate adaptations in moso bamboo populations
Yinguang Hou, Junwei Gan, Zeyu Fan, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 5
PHI-base – the multi-species pathogen–host interaction database in 2025
Martin Urban, Alayne Cuzick, James Seager, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D826-D838
Open Access | Times Cited: 5
Proteomic differences between extracellular vesicles and extracellular vesicle-depleted excretory/secretory products of barber’s pole worm
Fei Wu, Xueqiu Chen, Zhendong Du, et al.
Parasites & Vectors (2024) Vol. 17, Iss. 1
Open Access | Times Cited: 4
Neuronal differentiation requires BRAT1 complex to remove REST from chromatin
Sadat Dokaneheifard, Helena G. Dos Santos, Monica Guiselle Valencia, et al.
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 23
Open Access | Times Cited: 4
OrthoDB and BUSCO update: annotation of orthologs with wider sampling of genomes
Fredrik Tegenfeldt, Dmitry Kuznetsov, Mosè Manni, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D516-D522
Open Access | Times Cited: 4
Bamboo vinegar powder: Unveiling its antioxidant and antifungal efficacy through bioactive compound analysis and mechanistic insights
Yu-Pei Chen, C.-Y. Oliver Chen, Hongtan Wu, et al.
Food Chemistry (2025) Vol. 470, pp. 142718-142718
Closed Access
CompàreGenome: a command-line tool for genomic diversity estimation in prokaryotes and eukaryotes
Gabriele Moro, Rossano Atzeni, Ali M. Al‐Subhi, et al.
BMC Bioinformatics (2025) Vol. 26, Iss. 1
Open Access
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