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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

SigCom LINCS: data and metadata search engine for a million gene expression signatures
John Erol Evangelista, Daniel Clarke, Zhuorui Xie, et al.
Nucleic Acids Research (2022) Vol. 50, Iss. W1, pp. W697-W709
Open Access | Times Cited: 62

Showing 1-25 of 62 citing articles:

Enrichr-KG: bridging enrichment analysis across multiple libraries
John Erol Evangelista, Zhuorui Xie, Giacomo B. Marino, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. W1, pp. W168-W179
Open Access | Times Cited: 95
Pan-cancer proteogenomics characterization of tumor immunity
Francesca Petralia, Weiping Ma, Tomer M. Yaron, et al.
Cell (2024) Vol. 187, Iss. 5, pp. 1255-1277.e27
Open Access | Times Cited: 34
lncRNAlyzr: Enrichment Analysis for lncRNA Sets
John Erol Evangelista, Tahleel Ali-Nasser, L Malek, et al.
Journal of Molecular Biology (2025), pp. 168938-168938
Closed Access | Times Cited: 2
Progress in toxicogenomics to protect human health
Matthew J. Meier, Joshua Harrill, Kamin J. Johnson, et al.
Nature Reviews Genetics (2024)
Closed Access | Times Cited: 12
Rummagene: massive mining of gene sets from supporting materials of biomedical research publications
Daniel Clarke, Giacomo B. Marino, Eden Z. Deng, et al.
Communications Biology (2024) Vol. 7, Iss. 1
Open Access | Times Cited: 11
Immune cell profiles and predictive modeling in osteoporotic vertebral fractures using XGBoost machine learning algorithms
Yi-Chou Chen, Hui-Chen Su, Shih-Ming Huang, et al.
BioData Mining (2025) Vol. 18, Iss. 1
Open Access | Times Cited: 1
Playbook workflow builder: Interactive construction of bioinformatics workflows
Daniel Clarke, John Erol Evangelista, Zhuorui Xie, et al.
PLoS Computational Biology (2025) Vol. 21, Iss. 4, pp. e1012901-e1012901
Open Access | Times Cited: 1
GeneSetCart: assembling, augmenting, combining, visualizing, and analyzing gene sets
Giacomo B. Marino, Stephanie Olaiya, John Erol Evangelista, et al.
GigaScience (2025) Vol. 14
Open Access | Times Cited: 1
Functional identification of cis-regulatory long noncoding RNAs at controlled false discovery rates
Bhavya Dhaka, Marc Zimmerli, Daniel Hanhart, et al.
Nucleic Acids Research (2024) Vol. 52, Iss. 6, pp. 2821-2835
Open Access | Times Cited: 6
Precious3GPT: Multimodal Multi-Species Multi-Omics Multi-Tissue Transformer for Aging Research and Drug Discovery
Fedor Galkin, Владимир Наумов, Stefan Pushkov, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 6
Getting Started with LINCS Datasets and Tools
Zhuorui Xie, Eryk Kropiwnicki, Megan L. Wojciechowicz, et al.
Current Protocols (2022) Vol. 2, Iss. 7
Open Access | Times Cited: 20
lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs
Giacomo B. Marino, Megan L. Wojciechowicz, Daniel Clarke, et al.
Database (2023) Vol. 2023
Open Access | Times Cited: 12
PharmGWAS: a GWAS-based knowledgebase for drug repurposing
Hongen Kang, Siyu Pan, Shiqi Lin, et al.
Nucleic Acids Research (2023) Vol. 52, Iss. D1, pp. D972-D979
Open Access | Times Cited: 12
In-vivo neuronal dysfunction by Aβ and tau overlaps with brain-wide inflammatory mechanisms in Alzheimer’s disease
Lazaro M. Sanchez-Rodriguez, Ahmed Faraz Khan, Quadri Adewale, et al.
Frontiers in Aging Neuroscience (2024) Vol. 16
Open Access | Times Cited: 4
Gex2SGen: Designing Drug-like Molecules from Desired Gene Expression Signatures
Dibyajyoti Das, Broto Chakrabarty, Rajgopal Srinivasan, et al.
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 7, pp. 1882-1893
Closed Access | Times Cited: 11
Toxicology knowledge graph for structural birth defects
John Erol Evangelista, Daniel Clarke, Zhuorui Xie, et al.
Communications Medicine (2023) Vol. 3, Iss. 1
Open Access | Times Cited: 11
RNA Sequencing in Disease Diagnosis
Craig Smail, Stephen B. Montgomery
Annual Review of Genomics and Human Genetics (2024) Vol. 25, Iss. 1, pp. 353-367
Closed Access | Times Cited: 4
Mouse-to-human modeling of microglia single-nuclei transcriptomics identifies immune signaling pathways and potential therapeutic candidates associated with Alzheimer's disease
Alexander Bergendorf, Jee Hyun Park, Brendan K. Ball, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Unraveling AURKB as a potential therapeutic target in pulmonary hypertension using integrated transcriptomic analysis and pre-clinical studies
Sarah‐Eve Lemay, Manon Mougin, Mélanie Sauvaget, et al.
Cell Reports Medicine (2025), pp. 101964-101964
Open Access
Mechanism and Efficacy of Etanercept in Treating Autoimmune-like Manifestations of Coronavirus Disease 2019 in elderly individuals
Lizhong Zhang, Hongyi Li, Lei Shi, et al.
Immunobiology (2025) Vol. 230, Iss. 3, pp. 152898-152898
Open Access
A feasibility of computational drug screening for Fuchs endothelial corneal dystrophy
Itsuki Oka, Y. Toyokawa, K Imai, et al.
Scientific Reports (2025) Vol. 15, Iss. 1
Open Access
L2S2: chemical perturbation and CRISPR KO LINCS L1000 signature search engine
Giacomo B. Marino, John Erol Evangelista, Daniel Clarke, et al.
Nucleic Acids Research (2025)
Open Access
Stage-dependent Neural Mechanisms in Human Methamphetamine Abstinence: Insights from the Digital Twin Brain Model
Jiaqi Zhang, Yanyao Du, Li Jin, et al.
Biological Psychiatry (2025)
Closed Access
Transforming L1000 profiles to RNA-seq-like profiles with deep learning
Minji Jeon, Zhuorui Xie, John Erol Evangelista, et al.
BMC Bioinformatics (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 16
An ontology-based knowledge graph for representing interactions involving RNA molecules
Emanuele Cavalleri, Alberto Cabri, Mauricio Soto, et al.
Scientific Data (2024) Vol. 11, Iss. 1
Open Access | Times Cited: 3
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