OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!
If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.
Requested Article:
TCRmodel2: high-resolution modeling of T cell receptor recognition using deep learning
Rui Yin, Helder Veras Ribeiro Filho, Valerie C. L. Lin, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. W1, pp. W569-W576
Open Access | Times Cited: 45
Rui Yin, Helder Veras Ribeiro Filho, Valerie C. L. Lin, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. W1, pp. W569-W576
Open Access | Times Cited: 45
Showing 1-25 of 45 citing articles:
Identification of indirect CD4+ T cell epitopes associated with transplant rejection provides a target for donor-specific tolerance induction
Zhuldyz Zhanzak, Aileen C. Johnson, P. S. Foster, et al.
Immunity (2025)
Closed Access | Times Cited: 2
Zhuldyz Zhanzak, Aileen C. Johnson, P. S. Foster, et al.
Immunity (2025)
Closed Access | Times Cited: 2
Can AlphaFold’s breakthrough in protein structure help decode the fundamental principles of adaptive cellular immunity?
Benjamin McMaster, Christopher J. Thorpe, Graham S. Ogg, et al.
Nature Methods (2024) Vol. 21, Iss. 5, pp. 766-776
Closed Access | Times Cited: 14
Benjamin McMaster, Christopher J. Thorpe, Graham S. Ogg, et al.
Nature Methods (2024) Vol. 21, Iss. 5, pp. 766-776
Closed Access | Times Cited: 14
Structure-based prediction of T cell receptor recognition of unseen epitopes using TCRen
В. К. Карнаухов, Dmitrii S. Shcherbinin, Anton O. Chugunov, et al.
Nature Computational Science (2024) Vol. 4, Iss. 7, pp. 510-521
Closed Access | Times Cited: 8
В. К. Карнаухов, Dmitrii S. Shcherbinin, Anton O. Chugunov, et al.
Nature Computational Science (2024) Vol. 4, Iss. 7, pp. 510-521
Closed Access | Times Cited: 8
Preexisting Skin-Resident CD8 and γδ T-cell Circuits Mediate Immune Response in Merkel Cell Carcinoma and Predict Immunotherapy Efficacy
Zachary Z. Reinstein, Yue Zhang, Oscar E. Ospina, et al.
Cancer Discovery (2024) Vol. 14, Iss. 9, pp. 1631-1652
Closed Access | Times Cited: 5
Zachary Z. Reinstein, Yue Zhang, Oscar E. Ospina, et al.
Cancer Discovery (2024) Vol. 14, Iss. 9, pp. 1631-1652
Closed Access | Times Cited: 5
Revolutionizing Molecular Design for Innovative Therapeutic Applications through Artificial Intelligence
Ahrum Son, Jongham Park, Woojin Kim, et al.
Molecules (2024) Vol. 29, Iss. 19, pp. 4626-4626
Open Access | Times Cited: 5
Ahrum Son, Jongham Park, Woojin Kim, et al.
Molecules (2024) Vol. 29, Iss. 19, pp. 4626-4626
Open Access | Times Cited: 5
Structural and physical features that distinguish tumor-controlling from inactive cancer neoepitopes
Jean M. F. Custódio, Cory M. Ayres, Tatiana J. Rosales, et al.
Proceedings of the National Academy of Sciences (2023) Vol. 120, Iss. 51
Open Access | Times Cited: 12
Jean M. F. Custódio, Cory M. Ayres, Tatiana J. Rosales, et al.
Proceedings of the National Academy of Sciences (2023) Vol. 120, Iss. 51
Open Access | Times Cited: 12
Structural basis for T cell recognition of cancer neoantigens and implications for predicting neoepitope immunogenicity
Roy A. Mariuzza, Daichao Wu, Brian G. Pierce
Frontiers in Immunology (2023) Vol. 14
Open Access | Times Cited: 11
Roy A. Mariuzza, Daichao Wu, Brian G. Pierce
Frontiers in Immunology (2023) Vol. 14
Open Access | Times Cited: 11
The Evolving T Cell Receptor Recognition Code: The Rules Are More Like Guidelines
George I. Gray, P. Chukwunalu Chukwuma, Bassant Eldaly, et al.
Immunological Reviews (2025) Vol. 329, Iss. 1
Closed Access
George I. Gray, P. Chukwunalu Chukwuma, Bassant Eldaly, et al.
Immunological Reviews (2025) Vol. 329, Iss. 1
Closed Access
Fast and accurate modeling of TCR-peptide-MHC complexes using tFold-TCR
Fandi Wu, Yu Zhao, Yang Xiao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Closed Access
Fandi Wu, Yu Zhao, Yang Xiao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Closed Access
Origins of T‐cell‐mediated autoimmunity in acquired aplastic anaemia
Aura Enache, Shannon A. Carty, Daria V. Babushok
British Journal of Haematology (2025)
Open Access
Aura Enache, Shannon A. Carty, Daria V. Babushok
British Journal of Haematology (2025)
Open Access
How well do contextual protein encodings learn structure, function, and evolutionary context?
Sai Pooja Mahajan, Fátima A. Dávila-Hernández, Jeffrey A. Ruffolo, et al.
Cell Systems (2025) Vol. 16, Iss. 3, pp. 101201-101201
Closed Access
Sai Pooja Mahajan, Fátima A. Dávila-Hernández, Jeffrey A. Ruffolo, et al.
Cell Systems (2025) Vol. 16, Iss. 3, pp. 101201-101201
Closed Access
TRain: T-cell receptor automated immunoinformatics
Austin Seamann, Maia Bennett-Boehm, Ryan Ehrlich, et al.
BMC Bioinformatics (2025) Vol. 26, Iss. 1
Open Access
Austin Seamann, Maia Bennett-Boehm, Ryan Ehrlich, et al.
BMC Bioinformatics (2025) Vol. 26, Iss. 1
Open Access
T-cell receptor specificity landscape revealed through de novo peptide design
Gian Marco Visani, Michael N. Pun, Anastasia A. Minervina, et al.
(2025)
Open Access
Gian Marco Visani, Michael N. Pun, Anastasia A. Minervina, et al.
(2025)
Open Access
Determining T-cell Receptor Binding Orientation and Peptide-HLA Interactions Using Cross-Linking Mass Spectrometry
Thomas Powell, V. Karuppiah, Saher A. Shaikh, et al.
Journal of Biological Chemistry (2025), pp. 108445-108445
Open Access
Thomas Powell, V. Karuppiah, Saher A. Shaikh, et al.
Journal of Biological Chemistry (2025), pp. 108445-108445
Open Access
In silico prediction method for plant Nucleotide‐binding leucine‐rich repeat‐ and pathogen effector interactions
Alicia Fick, Jacobus Lukas Marthinus Fick, Velushka Swart, et al.
The Plant Journal (2025) Vol. 122, Iss. 2
Open Access
Alicia Fick, Jacobus Lukas Marthinus Fick, Velushka Swart, et al.
The Plant Journal (2025) Vol. 122, Iss. 2
Open Access
A journey to your self: The vague definition of immune self and its practical implications
Balázs Koncz, Gergő Mihály Balogh, Máté Manczinger
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 23
Open Access | Times Cited: 3
Balázs Koncz, Gergő Mihály Balogh, Máté Manczinger
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 23
Open Access | Times Cited: 3
Predicting Antigen‐Specificities of Orphan T Cell Receptors from Cancer Patients with TCRpcDist
Marta A. S. Perez, Johanna Chiffelle, Sara Bobisse, et al.
Advanced Science (2024) Vol. 11, Iss. 40
Open Access | Times Cited: 3
Marta A. S. Perez, Johanna Chiffelle, Sara Bobisse, et al.
Advanced Science (2024) Vol. 11, Iss. 40
Open Access | Times Cited: 3
TCR3d 2.0: expanding the T cell receptor structure database with new structures, tools and interactions
Valerie C. L. Lin, Melyssa Cheung, Ragul Gowthaman, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D604-D608
Open Access | Times Cited: 3
Valerie C. L. Lin, Melyssa Cheung, Ragul Gowthaman, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D604-D608
Open Access | Times Cited: 3
Structural characterization and AlphaFold modeling of human T cell receptor recognition of NRAS cancer neoantigens
Daichao Wu, Rui Yin, Guodong Chen, et al.
Science Advances (2024) Vol. 10, Iss. 47
Open Access | Times Cited: 3
Daichao Wu, Rui Yin, Guodong Chen, et al.
Science Advances (2024) Vol. 10, Iss. 47
Open Access | Times Cited: 3
Numbers and odds: TCR repertoire size and its age changes impacting on T cell functions
Nan‐ping Weng
Seminars in Immunology (2023) Vol. 69, pp. 101810-101810
Open Access | Times Cited: 9
Nan‐ping Weng
Seminars in Immunology (2023) Vol. 69, pp. 101810-101810
Open Access | Times Cited: 9
Global analysis of HLA-A2 restricted MAGE-A3 tumor antigen epitopes and corresponding TCRs in non-small cell lung cancer
Bei Zhang, Zhiyao Ren, Jianfu Zhao, et al.
Theranostics (2023) Vol. 13, Iss. 13, pp. 4449-4468
Open Access | Times Cited: 8
Bei Zhang, Zhiyao Ren, Jianfu Zhao, et al.
Theranostics (2023) Vol. 13, Iss. 13, pp. 4449-4468
Open Access | Times Cited: 8
Experimental Structures of Antibody/MHC-I Complexes Reveal Details of Epitopes Overlooked by Computational Prediction
Lisa F. Boyd, Jiansheng Jiang, Javeed Ahmad, et al.
The Journal of Immunology (2024) Vol. 212, Iss. 8, pp. 1366-1380
Open Access | Times Cited: 2
Lisa F. Boyd, Jiansheng Jiang, Javeed Ahmad, et al.
The Journal of Immunology (2024) Vol. 212, Iss. 8, pp. 1366-1380
Open Access | Times Cited: 2
AutoPepVax, a Novel Machine-Learning-Based Program for Vaccine Design: Application to a Pan-Cancer Vaccine Targeting EGFR Missense Mutations
Enrico Bautista, Young Hyun Jung, Manuela Jaramillo, et al.
Pharmaceuticals (2024) Vol. 17, Iss. 4, pp. 419-419
Open Access | Times Cited: 2
Enrico Bautista, Young Hyun Jung, Manuela Jaramillo, et al.
Pharmaceuticals (2024) Vol. 17, Iss. 4, pp. 419-419
Open Access | Times Cited: 2
Identification of an HLA-A*11:01-restricted neoepitope of mutant PIK3CA and its specific T cell receptors for cancer immunotherapy targeting hotspot driver mutations
Meiying Shen, Siyin Chen, Xiaojian Han, et al.
Cancer Immunology Immunotherapy (2024) Vol. 73, Iss. 8
Open Access | Times Cited: 2
Meiying Shen, Siyin Chen, Xiaojian Han, et al.
Cancer Immunology Immunotherapy (2024) Vol. 73, Iss. 8
Open Access | Times Cited: 2
Strengths and limitations of web servers for the modeling of TCRpMHC complexes
Hoa Nhu Le, Martiela Vaz de Freitas, Dinler A. Antunes
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 2938-2948
Open Access | Times Cited: 2
Hoa Nhu Le, Martiela Vaz de Freitas, Dinler A. Antunes
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 2938-2948
Open Access | Times Cited: 2
