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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

PLASMe: a tool to identify PLASMid contigs from short-read assemblies using transformer
Xubo Tang, Jiayu Shang, Yongxin Ji, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. 15, pp. e83-e83
Open Access | Times Cited: 31

Showing 1-25 of 31 citing articles:

Metagenomic absolute quantification of antibiotic resistance genes and virulence factor genes-carrying bacterial genomes in anaerobic digesters
Chunxiao Wang, Xiaole Yin, Xiaoqing Xu, et al.
Water Research (2024) Vol. 253, pp. 121258-121258
Closed Access | Times Cited: 12
PlasmidHunter: accurate and fast prediction of plasmid sequences using gene content profile and machine learning
Renmao Tian, Jizhong Zhou, Behzad Imanian
Briefings in Bioinformatics (2024) Vol. 25, Iss. 4
Open Access | Times Cited: 5
The PLSDB 2025 update: enhanced annotations and improved functionality for comprehensive plasmid research
Leidy-Alejandra G Molano, Pascal Hirsch, Matthias Hannig, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D189-D196
Open Access | Times Cited: 4
Transgenerational Gut Dysbiosis: Unveiling the Dynamics of Antibiotic Resistance through Mobile Genetic Elements from Mothers to Infants
S. Farooq, Absar Talat, Achal Dhariwal, et al.
International Journal of Antimicrobial Agents (2025) Vol. 65, Iss. 5, pp. 107458-107458
Closed Access
Genomic analysis of Enterobacter cloacae complex from Southern Thailand reveals insights into multidrug resistance genotypes and genetic diversity
Thunchanok Yaikhan, Kamonnut Singkhamanan, Pawarisa Luenglusontigit, et al.
Scientific Reports (2025) Vol. 15, Iss. 1
Open Access
Co-occurrence and Co-expression of Antibiotic, Biocide, and Metal Resistance Genes with Mobile Genetic Elements in Microbial Communities Subjected to Long-Term Antibiotic Pressure: Novel Insights from Metagenomics and Metatranscriptomics
Jiayu Zhang, Huaxin Lei, Jin Huang, et al.
Journal of Hazardous Materials (2025) Vol. 489, pp. 137559-137559
Closed Access
Genomic and Transcriptomic Profiling of Bacillus cereus in Milk: Insights into the Sweet Curdling Defect
Maria Kyritsi, George Tsiolas, Antiopi Tsoureki, et al.
Foods (2025) Vol. 14, Iss. 5, pp. 780-780
Open Access
Detection of a genetically related carbapenemase-producing E. coli ST167 in clinical and environmental isolates: Evidence for clonal spread of CPEs across humans and the environment in Iowa, United States
Hanseob Shin, David M. Cwiertny, Michelle Nelson, et al.
Journal of Global Antimicrobial Resistance (2025)
Open Access
A Review on the Applications of Transformer-based language models for Nucleotide Sequence Analysis
Nimisha Ghosh, Daniele Santoni, Indrajit Saha, et al.
Computational and Structural Biotechnology Journal (2025)
Open Access
Antibiotic resistance profile of nitrogen-metabolizing microbes in anoxic‒oxic processes for swine wastewater treatment
Yiwen Yang, Shuang Cai, Feng Huang, et al.
npj Clean Water (2025) Vol. 8, Iss. 1
Open Access
Olive Pruning: Waste or Growth Media? Expanding the Metabolic Potential of Phyllospheric Rhodococcus sp. 24CO
Natalia Sandoval, Margarita Gomila, Nadia S. Arias, et al.
Fermentation (2025) Vol. 11, Iss. 5, pp. 237-237
Open Access
Comprehensive survey of copper resistance and analysis of responsible genes in Pseudomonas syringae pv. actinidiae biovar 1 and biovar 3 isolates from Japan
M. Aono, Takanori Miyoshi, Haruka Yagi, et al.
Journal of General Plant Pathology (2024) Vol. 90, Iss. 3, pp. 134-143
Closed Access | Times Cited: 3
Prevalence and genomic characterization of the Bacillus cereus group strains contamination in food products in Southern China
Zhiwei Zheng, Lianwei Ye, Wenguang Xiong, et al.
The Science of The Total Environment (2024) Vol. 921, pp. 170903-170903
Closed Access | Times Cited: 3
Genomic insights into the plasmidome of non-tuberculous mycobacteria
Margo Diricks, Florian P. Maurer, Viola Dreyer, et al.
Genome Medicine (2025) Vol. 17, Iss. 1
Open Access
Integrating metagenomic and isolation strategies revealed high contamination of pathogenies and resistome in market shrimps
Lianwei Ye, Zhiwei Zheng, Yaling Wang, et al.
The Science of The Total Environment (2024) Vol. 926, pp. 171924-171924
Closed Access | Times Cited: 2
Metagenomic Investigation of the Short-Term Temporal and Spatial Dynamics of the Bacterial Microbiome and the Resistome Downstream of a Wastewater Treatment Plant in the Iskar River in Bulgaria
Deyan Donchev, Ivan Ivanov, Ivan Stoikov, et al.
Microorganisms (2024) Vol. 12, Iss. 6, pp. 1250-1250
Open Access | Times Cited: 2
Airborne antibiotic resistome from sludge dewatering systems: mobility, pathogen accessibility, cross-media migration propensity, impacting factors, and risks
Yang Tang, Xuyi Wang, How Yong Ng, et al.
Water Research (2024) Vol. 267, pp. 122552-122552
Closed Access | Times Cited: 2
Integrated molecular, phenotypic and epidemiological surveillance of antimicrobial resistance in Neisseria gonorrhoeae in Germany
Kathleen Klaper, Hana Tlapák, Regina Selb, et al.
International Journal of Medical Microbiology (2024) Vol. 314, pp. 151611-151611
Open Access | Times Cited: 1
Machine learning-enabled prediction of antimicrobial resistance in foodborne pathogens
Bona Yun, Xinyu Liao, Jinsong Feng, et al.
CyTA - Journal of Food (2024) Vol. 22, Iss. 1
Open Access | Times Cited: 1
Hybrid Sequencing Facilitates RobustDe NovoPlasmid Assembly
Sarah Hernández, Casey-Tyler Berezin, Katie Miller, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Deciphering the genetic landscape of enhanced poly-3-hydroxybutyrate production in Synechocystis sp. B12
Anna Santin, Flavio Collura, G.V. Singh, et al.
Biotechnology for Biofuels and Bioproducts (2024) Vol. 17, Iss. 1
Open Access | Times Cited: 1
Rapid Reversal of Carbapenemase-Producing Pseudomonas aeruginosa Epidemiology from blaVIM- to blaNDM-harbouring Isolates in a Greek Tertiary Care Hospital
Efthymia Protonotariou, Georgios Meletis, Nikoletta Vlachodimou, et al.
Antibiotics (2024) Vol. 13, Iss. 8, pp. 762-762
Open Access | Times Cited: 1
Transformer-Based Deep Learning Model with Latent Space Regularization for CRISPR-Cas Protein Sequence Classification
Bharani Nammi, Sita Sirisha Madugula, Pranav Pujar, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Bioinformatic tool development and application to the human gut microbiome
Alexei Chklovski
(2024)
Open Access
Salmonella Typhi Haplotype 58 (H58) Biofilm Formation and Genetic Variation in Typhoid Fever Patients with Gallstones in an Endemic Setting in Kenya
Peter Muturi, Peter Wachira, John M. Wagacha, et al.
medRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
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