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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Predictive biophysical modeling and understanding of the dynamics of mRNA translation and its evolution
Hadas Zur, Tamir Tuller
Nucleic Acids Research (2016), pp. gkw764-gkw764
Open Access | Times Cited: 92

Showing 1-25 of 92 citing articles:

Designing and interpreting ‘multi-omic’ experiments that may change our understanding of biology
Robert Haas, Aleksej Zelezniak, Jacopo Iacovacci, et al.
Current Opinion in Systems Biology (2017) Vol. 6, pp. 37-45
Open Access | Times Cited: 115
The impact of ribosomal interference, codon usage, and exit tunnel interactions on translation elongation rate variation
Khanh Dao Duc, Yun S. Song
PLoS Genetics (2018) Vol. 14, Iss. 1, pp. e1007166-e1007166
Open Access | Times Cited: 103
Cis-regulatory elements explain most of the mRNA stability variation across genes in yeast
Jun Cheng, Kerstin C. Maier, Žiga Avsec, et al.
RNA (2017) Vol. 23, Iss. 11, pp. 1648-1659
Open Access | Times Cited: 78
The extent of ribosome queuing in budding yeast
Alon Diament, Anna Feldman, Elisheva Schochet, et al.
PLoS Computational Biology (2018) Vol. 14, Iss. 1, pp. e1005951-e1005951
Open Access | Times Cited: 73
A chemical kinetic basis for measuring translation initiation and elongation rates from ribosome profiling data
Ajeet K. Sharma, Pietro Sormanni, Nabeel Ahmed, et al.
PLoS Computational Biology (2019) Vol. 15, Iss. 5, pp. e1007070-e1007070
Open Access | Times Cited: 68
The Key Parameters that Govern Translation Efficiency
Dan D. Erdmann-Pham, Khanh Dao Duc, Yun S. Song
Cell Systems (2020) Vol. 10, Iss. 2, pp. 183-192.e6
Open Access | Times Cited: 59
Inverted translational control of eukaryotic gene expression by ribosome collisions
Heungwon Park, Arvind R. Subramaniam
PLoS Biology (2019) Vol. 17, Iss. 9, pp. e3000396-e3000396
Open Access | Times Cited: 56
The effects of codon bias and optimality on mRNA and protein regulation
Fabian Hia, Osamu Takeuchi
Cellular and Molecular Life Sciences (2020) Vol. 78, Iss. 5, pp. 1909-1928
Open Access | Times Cited: 41
Scikit-ribo Enables Accurate Estimation and Robust Modeling of Translation Dynamics at Codon Resolution
Han Fang, Yi-Fei Huang, Aditya Radhakrishnan, et al.
Cell Systems (2018) Vol. 6, Iss. 2, pp. 180-191.e4
Open Access | Times Cited: 45
Modelling and measuring intracellular competition for finite resources during gene expression
Renana Sabi, Tamir Tuller
Journal of The Royal Society Interface (2019) Vol. 16, Iss. 154, pp. 20180887-20180887
Open Access | Times Cited: 38
Recent advances in ribosome profiling for deciphering translational regulation
Yirong Wang, Hong Zhang, Jian Lü
Methods (2019) Vol. 176, pp. 46-54
Closed Access | Times Cited: 36
Widespread non-modular overlapping codes in the coding regions*
Shaked Bergman, Tamir Tuller
Physical Biology (2020) Vol. 17, Iss. 3, pp. 031002-031002
Closed Access | Times Cited: 33
Taking control over microbial populations: Current approaches for exploiting biological noise in bioprocesses
Frank Delvigne, Jonathan Baert, Hosni Sassi, et al.
Biotechnology Journal (2017) Vol. 12, Iss. 7
Closed Access | Times Cited: 38
Deciphering mRNA Sequence Determinants of Protein Production Rate
Juraj Szavits-Nossan, Luca Ciandrini, M. Carmen Romano
Physical Review Letters (2018) Vol. 120, Iss. 12
Open Access | Times Cited: 35
Optimizing the dynamics of protein expression
Jan‐Hendrik Trösemeier, Sophia Rudorf, Holger Loessner, et al.
Scientific Reports (2019) Vol. 9, Iss. 1
Open Access | Times Cited: 31
Bethe ansatz approach for the steady state of the asymmetric simple exclusion process with open boundaries
Xin Zhang, Fa-Kai Wen
Physical review. B./Physical review. B (2025) Vol. 111, Iss. 3
Closed Access
Networks of ribosome flow models for modeling and analyzing intracellular traffic
Itzik Nanikashvili, Yoram Zarai, Alexander Ovseevich, et al.
Scientific Reports (2019) Vol. 9, Iss. 1
Open Access | Times Cited: 26
Inferring efficiency of translation initiation and elongation from ribosome profiling
Juraj Szavits-Nossan, Luca Ciandrini
Nucleic Acids Research (2020) Vol. 48, Iss. 17, pp. 9478-9490
Open Access | Times Cited: 26
Combined statistical-mechanistic modeling links ion channel genes to physiology of cortical neuron types
Yves Bernaerts, Michael Deistler, Pedro J. Gonçalves, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 9
Genome scale analysis of Escherichia coli with a comprehensive prokaryotic sequence-based biophysical model of translation initiation and elongation
Gilad Shaham, Tamir Tuller
DNA Research (2017) Vol. 25, Iss. 2, pp. 195-205
Open Access | Times Cited: 27
Power series solution of the inhomogeneous exclusion process
Juraj Szavits-Nossan, M. Carmen Romano, Luca Ciandrini
Physical review. E (2018) Vol. 97, Iss. 5
Open Access | Times Cited: 26
Translational buffering by ribosome stalling in upstream open reading frames
Ty Bottorff, Heungwon Park, Adam P. Geballe, et al.
PLoS Genetics (2022) Vol. 18, Iss. 10, pp. e1010460-e1010460
Open Access | Times Cited: 14
FMRP-dependent production of large dosage-sensitive proteins is highly conserved
Keegan Flanagan, Alireza Baradaran‐Heravi, Qi Yin, et al.
Genetics (2022) Vol. 221, Iss. 4
Open Access | Times Cited: 13
Reduced Protein Expression in a Virus Attenuated by Codon Deoptimization
Benjamin R. Jack, Daniel R. Boutz, Matthew L. Paff, et al.
G3 Genes Genomes Genetics (2017) Vol. 7, Iss. 9, pp. 2957-2968
Open Access | Times Cited: 24
Theoretical analysis of the distribution of isolated particles in totally asymmetric exclusion processes: Application to mRNA translation rate estimation
Khanh Dao Duc, Zain H. Saleem, Yun S. Song
Physical review. E (2018) Vol. 97, Iss. 1
Open Access | Times Cited: 22
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