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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

CPPred: coding potential prediction based on the global description of RNA sequence
Xiaoxue Tong, Shiyong Liu
Nucleic Acids Research (2019) Vol. 47, Iss. 8, pp. e43-e43
Open Access | Times Cited: 116

Showing 1-25 of 116 citing articles:

Long non-coding RNAs: emerging players regulating plant abiotic stress response and adaptation
Uday Chand Jha, Harsh Nayyar, Rintu Jha, et al.
BMC Plant Biology (2020) Vol. 20, Iss. 1
Open Access | Times Cited: 154
Non-coding RNAs in human health and disease: potential function as biomarkers and therapeutic targets
Tamizhini Loganathan, C. George Priya Doss
Functional & Integrative Genomics (2023) Vol. 23, Iss. 1
Open Access | Times Cited: 94
Short open reading frames (sORFs) and microproteins: an update on their identification and validation measures
Alyssa Zi-Xin Leong, Pey Yee Lee, M. Aiman Mohtar, et al.
Journal of Biomedical Science (2022) Vol. 29, Iss. 1
Open Access | Times Cited: 50
A task-specific encoding algorithm for RNAs and RNA-associated interactions based on convolutional autoencoder
Yunxia Wang, Ziqi Pan, Minjie Mou, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. 21, pp. e110-e110
Open Access | Times Cited: 34
RNAincoder: a deep learning-based encoder for RNA and RNA-associated interaction
Yunxia Wang, Zhen Chen, Ziqi Pan, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. W1, pp. W509-W519
Open Access | Times Cited: 25
LncMirNet: Predicting LncRNA–miRNA Interaction Based on Deep Learning of Ribonucleic Acid Sequences
Sen Yang, Yan Wang, Yu Lin, et al.
Molecules (2020) Vol. 25, Iss. 19, pp. 4372-4372
Open Access | Times Cited: 63
DeepCPP: a deep neural network based on nucleotide bias information and minimum distribution similarity feature selection for RNA coding potential prediction
Yu Zhang, Cangzhi Jia, Melissa J. Fullwood, et al.
Briefings in Bioinformatics (2020) Vol. 22, Iss. 2, pp. 2073-2084
Closed Access | Times Cited: 57
Cancer-related micropeptides encoded by ncRNAs: Promising drug targets and prognostic biomarkers
Sarra Setrerrahmane, Mengwei Li, Abdelmoumin Zoghbi, et al.
Cancer Letters (2022) Vol. 547, pp. 215723-215723
Closed Access | Times Cited: 36
ncRNAInter: a novel strategy based on graph neural network to discover interactions between lncRNA and miRNA
Hanyu Zhang, Yunxia Wang, Ziqi Pan, et al.
Briefings in Bioinformatics (2022) Vol. 23, Iss. 6
Closed Access | Times Cited: 29
The ChickenGTEx pilot analysis: a reference of regulatory variants across 28 chicken tissues
Dailu Guan, Zhonghao Bai, Xiaoning Zhu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 17
Reconsidering proteomic diversity with functional investigation of small ORFs and alternative ORFs
Marie A. Brunet, Sébastien Leblanc, Xavier Roucou
Experimental Cell Research (2020) Vol. 393, Iss. 1, pp. 112057-112057
Open Access | Times Cited: 48
The lncRNA Toolkit: Databases and In Silico Tools for lncRNA Analysis
Holly R. Pinkney, Brandon M. Wright, Sarah D. Diermeier
Non-Coding RNA (2020) Vol. 6, Iss. 4, pp. 49-49
Open Access | Times Cited: 44
Decoding LncRNAs
Lidia Borkiewicz, Joanna Kałafut, Karolina Dudziak, et al.
Cancers (2021) Vol. 13, Iss. 11, pp. 2643-2643
Open Access | Times Cited: 36
The hunt for sORFs: A multidisciplinary strategy
Marlies K. R. Peeters, Gerben Menschaert
Experimental Cell Research (2020) Vol. 391, Iss. 1, pp. 111923-111923
Closed Access | Times Cited: 35
The computational approaches of lncRNA identification based on coding potential: Status quo and challenges
Jing Li, Xuan Zhang, Changning Liu
Computational and Structural Biotechnology Journal (2020) Vol. 18, pp. 3666-3677
Open Access | Times Cited: 35
csORF-finder: an effective ensemble learning framework for accurate identification of multi-species coding short open reading frames
Meng Zhang, Jian Zhao, Chen Li, et al.
Briefings in Bioinformatics (2022) Vol. 23, Iss. 6
Open Access | Times Cited: 19
Unveiling the secrets of non-coding RNA-encoded peptides in plants: A comprehensive review of mining methods and research progress
Zhengjie Wang, Qi Cui, Chenglin Su, et al.
International Journal of Biological Macromolecules (2023) Vol. 242, pp. 124952-124952
Closed Access | Times Cited: 13
Identification of lncRNA-mRNA interactions and genome-wide lncRNA annotation in animal transcriptome profiling
Yoon-Been Park, Jun‐Mo Kim
Journal of Animal Science and Technology (2023)
Open Access | Times Cited: 11
Elucidating the Functional Roles of Long Non-coding RNAs in Alzheimer's Disease
Zhenyu Huang, Qiufen Chen, Xuechen Mu, et al.
(2024)
Open Access | Times Cited: 4
Bioinformatic database, artificial intelligence and machine learning-based tools for non-coding RNA study
Karen P. Pachchigar, Darshan T. Dharajiya, Gaurav S. Dave, et al.
Elsevier eBooks (2025), pp. 51-75
Closed Access
Human long noncoding RNA VILMIR is induced by major respiratory viral infections and modulates the host interferon response
K John, Ian Huntress, Ethan D. Smith, et al.
Journal of Virology (2025)
Open Access
TetraRNA, a tetra-class machine learning model for deciphering the coding potential derivation of RNA world
Hanrui Bai, Jie Wang, Xiaoke Jiang, et al.
Computational and Structural Biotechnology Journal (2025) Vol. 27, pp. 1305-1317
Open Access
Identification and functional analysis of growth rate associated long non-coding RNAs in Komagataella phaffii
Benjamin Luke Coltman, Krishna Motheramgari, Nadine E. Tatto, et al.
Computational and Structural Biotechnology Journal (2025)
Open Access
SORFPP: Enhancing rich sequence-driven information to identify SEPs based on fused framework on validation datasets
Hongqi Feng, Q. Nie, Sen Yang
PLoS ONE (2025) Vol. 20, Iss. 4, pp. e0320314-e0320314
Open Access
LncDC: a machine learning-based tool for long non-coding RNA detection from RNA-Seq data
Minghua Li, Chun Liang
Scientific Reports (2022) Vol. 12, Iss. 1
Open Access | Times Cited: 17
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