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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

RNAsamba: neural network-based assessment of the protein-coding potential of RNA sequences
Antônio Pedro Camargo, Vsevolod Sourkov, Gonçalo Pereira, et al.
NAR Genomics and Bioinformatics (2020) Vol. 2, Iss. 1
Open Access | Times Cited: 97

Showing 1-25 of 97 citing articles:

Identification of mobile genetic elements with geNomad
Antônio Pedro Camargo, Simon Roux, Frederik Schulz, et al.
Nature Biotechnology (2023) Vol. 42, Iss. 8, pp. 1303-1312
Open Access | Times Cited: 198
You can move, but you can't hide: identification of mobile genetic elements with geNomad
Antônio Pedro Camargo, Simon Roux, Frederik Schulz, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 46
Revisiting sORFs: overcoming challenges to identify and characterize functional microproteins
Dörte Schlesinger, Simon J. Elsässer
FEBS Journal (2021) Vol. 289, Iss. 1, pp. 53-74
Open Access | Times Cited: 89
AI applications in functional genomics
Claudia Caudai, Antonella Galizia, Filippo Geraci, et al.
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 5762-5790
Open Access | Times Cited: 80
A task-specific encoding algorithm for RNAs and RNA-associated interactions based on convolutional autoencoder
Yunxia Wang, Ziqi Pan, Minjie Mou, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. 21, pp. e110-e110
Open Access | Times Cited: 34
RNAincoder: a deep learning-based encoder for RNA and RNA-associated interaction
Yunxia Wang, Zhen Chen, Ziqi Pan, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. W1, pp. W509-W519
Open Access | Times Cited: 25
Microproteins—Discovery, structure, and function
Jessica J. Mohsen, Alina A. Martel, Sarah A. Slavoff
PROTEOMICS (2023) Vol. 23, Iss. 23-24
Open Access | Times Cited: 23
LncRNA-encoded peptides in cancer
Yaguang Zhang
Journal of Hematology & Oncology (2024) Vol. 17, Iss. 1
Open Access | Times Cited: 15
No country for old methods: New tools for studying microproteins
Fabiola Valdivia-Francia, Ataman Sendoel
iScience (2024) Vol. 27, Iss. 2, pp. 108972-108972
Open Access | Times Cited: 12
Big data and deep learning for RNA biology
Hyeonseo Hwang, Hyeonseong Jeon, Nagyeong Yeo, et al.
Experimental & Molecular Medicine (2024) Vol. 56, Iss. 6, pp. 1293-1321
Open Access | Times Cited: 11
Small Open Reading Frame-Encoded Micro-Peptides: An Emerging Protein World
Xiao‐Ping Dong, Kun Zhang, Chengfeng Xun, et al.
International Journal of Molecular Sciences (2023) Vol. 24, Iss. 13, pp. 10562-10562
Open Access | Times Cited: 19
Transposable element sequence fragments incorporated into coding and noncoding transcripts modulate the transcriptome of human pluripotent stem cells
Isaac A. Babarinde, Gang Ma, Yuhao Li, et al.
Nucleic Acids Research (2021) Vol. 49, Iss. 16, pp. 9132-9153
Open Access | Times Cited: 35
csORF-finder: an effective ensemble learning framework for accurate identification of multi-species coding short open reading frames
Meng Zhang, Jian Zhao, Chen Li, et al.
Briefings in Bioinformatics (2022) Vol. 23, Iss. 6
Open Access | Times Cited: 19
InfoScan: A New Transcript Identification Tool Based on scRNA-Seq and Its Application in Glioblastoma
Shi-Qiang Mei, Jinjin Huang, Zhen Zhang, et al.
International Journal of Molecular Sciences (2025) Vol. 26, Iss. 5, pp. 2208-2208
Open Access
Identification and functional analysis of growth rate associated long non-coding RNAs in Komagataella phaffii
Benjamin Luke Coltman, Krishna Motheramgari, Nadine E. Tatto, et al.
Computational and Structural Biotechnology Journal (2025)
Open Access
A deep learning model for plant lncRNA-protein interaction prediction with graph attention
Jael Sanyanda Wekesa, Jun Meng, Yushi Luan
Molecular Genetics and Genomics (2020) Vol. 295, Iss. 5, pp. 1091-1102
Closed Access | Times Cited: 32
FusionGDB 2.0: fusion gene annotation updates aided by deep learning
Pora Kim, Hua Tan, Jiajia Liu, et al.
Nucleic Acids Research (2021) Vol. 50, Iss. D1, pp. D1221-D1230
Open Access | Times Cited: 27
The genome sequence of the painted lady, Vanessa cardui Linnaeus 1758
Konrad Lohse, Charlotte Wright, Gerard Talavera, et al.
Wellcome Open Research (2021) Vol. 6, pp. 324-324
Open Access | Times Cited: 25
Surviving in the Brine: A Multi-Omics Approach for Understanding the Physiology of the Halophile Fungus Aspergillus sydowii at Saturated NaCl Concentration
Irina Jiménez‐Gómez, Gisell Valdés-Muñoz, Aldo Moreno‐Ulloa, et al.
Frontiers in Microbiology (2022) Vol. 13
Open Access | Times Cited: 17
LncCat: An ORF attention model to identify LncRNA based on ensemble learning strategy and fused sequence information
Hongqi Feng, Shaocong Wang, Yan Wang, et al.
Computational and Structural Biotechnology Journal (2023) Vol. 21, pp. 1433-1447
Open Access | Times Cited: 10
Unveiling Polysomal Long Non-Coding RNA Expression on the First Day of Adipogenesis and Osteogenesis in Human Adipose-Derived Stem Cells
Bernardo Bonilauri, Annanda Lyra Ribeiro, Lucía Spangenberg, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 4, pp. 2013-2013
Open Access | Times Cited: 3
No country for old methods: New tools for studying microproteins
Fabiola Valdivia-Francia, Ataman Sendoel
iScience (2024) Vol. 27, Iss. 8, pp. 110478-110478
Open Access | Times Cited: 3
Structural and biochemical insights of xylose MFS and SWEET transporters in microbial cell factories: challenges to lignocellulosic hydrolysates fermentation
Iasmin Cartaxo Taveira, Cláudia Batista Carraro, Karoline Maria Vieira Nogueira, et al.
Frontiers in Microbiology (2024) Vol. 15
Open Access | Times Cited: 3
Prediction of Coding and Non-Coding RNAs
Shrijit Jaigopal, Ganga Ram Chaudhary, Uditi D. Arora, et al.
Elsevier eBooks (2025)
Closed Access
The Role of Non-Coding RNAs in the Human Placenta
Milena Žarković, Franziska Hufsky, Udo R. Markert, et al.
Cells (2022) Vol. 11, Iss. 9, pp. 1588-1588
Open Access | Times Cited: 16
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