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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Contributions of adaptation and purifying selection to SARS-CoV-2 evolution
Richard A. Neher
Virus Evolution (2022) Vol. 8, Iss. 2
Open Access | Times Cited: 54

Showing 1-25 of 54 citing articles:

The evolution of SARS-CoV-2
Peter V. Markov, Mahan Ghafari, Martin Beer, et al.
Nature Reviews Microbiology (2023) Vol. 21, Iss. 6, pp. 361-379
Open Access | Times Cited: 791
A pseudovirus system enables deep mutational scanning of the full SARS-CoV-2 spike
Bernadeta Dadonaite, Katharine H. D. Crawford, Caelan E. Radford, et al.
Cell (2023) Vol. 186, Iss. 6, pp. 1263-1278.e20
Open Access | Times Cited: 143
Fitness effects of mutations to SARS-CoV-2 proteins
Jesse D. Bloom, Richard A. Neher
Virus Evolution (2023) Vol. 9, Iss. 2
Open Access | Times Cited: 73
Evolution and neutralization escape of the SARS-CoV-2 BA.2.86 subvariant
Khadija Khan, Gila Lustig, Cornelius Römer, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 72
SARS-CoV-2 nsp3 and nsp4 are minimal constituents of a pore spanning replication organelle
Liv Zimmermann, Xiaohan Zhao, Jana Makroczyová, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 48
The Emergence and Evolution of SARS-CoV-2
Edward C. Holmes
Annual Review of Virology (2024) Vol. 11, Iss. 1, pp. 21-42
Closed Access | Times Cited: 32
Fitness effects of mutations to SARS-CoV-2 proteins
Jesse D. Bloom, Richard A. Neher
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 31
Within-host genetic diversity of SARS-CoV-2 lineages in unvaccinated and vaccinated individuals
Haogao Gu, Ahmed Abdul Quadeer, Pavithra Krishnan, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 28
Using big sequencing data to identify chronic SARS-Coronavirus-2 infections
Sheri Harari, Danielle Miller, Shay Fleishon, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 13
SARS-CoV-2 evolution during prolonged infection in immunocompromised patients
Andrew D. Marques, Jevon Graham-Wooten, Ayannah S. Fitzgerald, et al.
mBio (2024) Vol. 15, Iss. 3
Open Access | Times Cited: 12
The mutation rate of SARS-CoV-2 is highly variable between sites and is influenced by sequence context, genomic region, and RNA structure
Hugh K. Haddox, Georg Angehrn, Luca Sesta, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access | Times Cited: 1
Lineage replacement and evolution captured by 3 years of the United Kingdom Coronavirus (COVID-19) Infection Survey
Katrina Lythgoe, Tanya Golubchik, Matthew Hall, et al.
Proceedings of the Royal Society B Biological Sciences (2023) Vol. 290, Iss. 2009
Open Access | Times Cited: 19
Developing an appropriate evolutionary baseline model for the study of SARS-CoV-2 patient samples
John W. Terbot, Parul Johri, Schuyler Liphardt, et al.
PLoS Pathogens (2023) Vol. 19, Iss. 4, pp. e1011265-e1011265
Open Access | Times Cited: 18
Using big sequencing data to identify chronic SARS-Coronavirus-2 infections
Sheri Harari, Danielle Miller, Shay Fleishon, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 17
Concepts and methods for predicting viral evolution
Matthijs Meijers, Denis Ruchnewitz, Jan Eberhardt, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 6
Assessing the emergence time of SARS-CoV-2 zoonotic spillover
Stéphane Samson, Étienne Lord, Vladimir Makarenkov
PLoS ONE (2024) Vol. 19, Iss. 4, pp. e0301195-e0301195
Open Access | Times Cited: 5
Some mechanistic underpinnings of molecular adaptations of SARS-COV-2 spike protein by integrating candidate adaptive polymorphisms with protein dynamics
Nicholas J. Ose, Paul Campitelli, Tushar Modi, et al.
eLife (2024) Vol. 12
Open Access | Times Cited: 4
Concepts and Methods for Predicting Viral Evolution
Matthijs Meijers, Denis Ruchnewitz, Jan Eberhardt, et al.
Methods in molecular biology (2025), pp. 253-290
Closed Access
Strong evidence for the evolution of decreasing compositional heterogeneity in SARS-CoV-2 genomes during the pandemic
José Luis Tejera Oliver, Pedro Bernaola‐Galván, Pedro Carpena, et al.
Scientific Reports (2025) Vol. 15, Iss. 1
Open Access
Estimating Re and overdispersion in secondary cases from the size of identical sequence clusters of SARS-CoV-2
Emma B. Hodcroft, Martin Wohlfender, Richard A. Neher, et al.
PLoS Computational Biology (2025) Vol. 21, Iss. 4, pp. e1012960-e1012960
Open Access
Dynamic Allostery: Evolution’s Double-Edged Sword in Protein Function and Disease
Paul Campitelli, I. Can Kazan, Sean Hamilton, et al.
Journal of Molecular Biology (2025), pp. 169175-169175
Closed Access
Evolution and neutralization escape of the SARS-CoV-2 BA.2.86 subvariant
Khadija Khan, Gila Lustig, Kajal Reedoy, et al.
medRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 10
Accounting for reporting delays in real-time phylodynamic analyses with preferential sampling
Catalina Medina, Julia A. Palacios, Vladimir N. Minin
PLoS Computational Biology (2025) Vol. 21, Iss. 5, pp. e1012970-e1012970
Open Access
Lineage replacement and evolution captured by three years of the United Kingdom Covid Infection Survey
Katrina Lythgoe, Tanya Golubchik, Matthew Hall, et al.
medRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 11
A pseudovirus system enables deep mutational scanning of the full SARS-CoV-2 spike
Bernadeta Dadonaite, Katharine H. D. Crawford, Caelan E. Radford, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 10
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